Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4081

Barx1 BarH-like homeobox 1 ( MGI:103124)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4081 EMAGE:4081
Fig4A. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.1999.9527] Dev Biol 217: 10-24, Clouthier DE; Williams SC; Yanagisawa H; Wieduwilt M; Richardson JA; Yanagisawa M, Signaling pathways crucial for craniofacial development revealed by endothelin-A receptor-deficient mice. Copyright 2000 Fig4B. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.1999.9527] Dev Biol 217: 10-24, Clouthier DE; Williams SC; Yanagisawa H; Wieduwilt M; Richardson JA; Yanagisawa M, Signaling pathways crucial for craniofacial development revealed by endothelin-A receptor-deficient mice. Copyright 2000

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Fig4B is a frontal view of the embryo shown in Fig4A. Image annotations: Pharyngeal arches are outlined and numbered. Arrows in Fig4B indicate expression in the distal aspect of arch 2.
Expression Pattern Description
Spatial Annotation:
EMAGE:4081Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4081_wholemount_strong_3D_1.wlz
4081_wholemount_moderate_3D_1.wlz
4081_wholemount_possible_3D_1.wlz
4081_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4081_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
1st branchial arch mandibular component
detected detected
regionalExpression is in the proximal parts.
1st branchial arch maxillary component
detected detected
regionalExpression is in the proximal parts.
2nd branchial arch
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1266836
Entity Detected:Barx1, BarH-like homeobox 1 ( MGI:103124)
Sequence:sense strand is shown

>MGI:1266836
GAAGCTGGAAGCAGCTGGCTCTGGTGAACCTGGCGCGAAAGCCAAGAAAGGACGCCGGAGTCGCACCGTA
TTCACTGAGCTGCAGCTGATGGGGCTGGAGAAACGCTTCGAGAAGCAGAAGTACCTCTCTACCCCTGACA
GAATAGATCTAGCTGAGTCCCTGGGCCTGAGCCAGTTACAGGTGAAGACGTGGTATCAAAATCGGAGGAT
GAAATGGAAGAAAATAGTGCTGCAAGGTGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGACGGCCCAAG
AAGAACTCCATCCCCACGAGCGAGCAGCTCACGGAGCAAGAGCGTGCCAAGGAGACAGAGAAGCCAGCGG
AGACGCCGGGCGAGCCCAGCGACCGAAATTGCGAGGACTGAGCGTCGCCGAGGATGCGGCTGGCGCGGTC
GGCGGGGACCCAGGAGCTGGCCCTTCCGCGTCCATGCCGTTTGCTTTCTAATCATTTCATTACTACTTTG
AATGCAGACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCT
TCTGTCCCCAGTCTGGGAGACTTGTGTCCAGCGTGGCCGAAGCTTCTGGTCTTTCTCGGACCTCCGCAGT
GTGCGGCGCTCCACGCTCATTCACGCCCCGCTCCTTGCCCACACTTTTATCCCCGGCCTCCAGCCGGCC
nt 198 - nt 896 of Y07960.1
Notes:The Barx1 probe used in this study by Clouthier et al., 2000 [PMID:10625532] was previously described by Tissier-Seta et al., 1995 [PMID:7669690] as follows: "Barx1 transcripts were detected with an antisense cRNA probe transcribed by T3 RNA polymerase from the plasmid pab80PH containing nt 198-896 of the Barx1 sequence. Editors Note: The sequence shown in Tissier-Seta et al., 1995 is Y07960.1.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase
General Information
Authors:Clouthier DE; Williams SC; Yanagisawa H; Wieduwilt M; Richardson JA; Yanagisawa M, 2000 [PMID:10625532] , Indexed by GXD, Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1006/dbio.1999.9527] [ PMID:10625532] Clouthier DE, Williams SC, Yanagisawa H, Wieduwilt M, Richardson JA, Yanagisawa M 2000 Signaling pathways crucial for craniofacial development revealed by endothelin-A receptor-deficient mice. Dev Biol (217):10-24
 [ doi:10.1016/0925-4773(94)00343-L] [ PMID:7669690] Tissier-Seta JP, Mucchielli ML, Mark M, Mattei MG, Goridis C, Brunet JF 1995 Barx1, a new mouse homeodomain transcription factor expressed in cranio-facial ectomesenchyme and the stomach. Mech Dev (51):3-15
Links:MGI:2135647 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI