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EMAGE:4104

Foxg1 forkhead box G1 ( MGI:1347464)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4104
Fig4A. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.2001.0531] Dev Biol 242: 204-23, Tian E; Kimura C; Takeda N; Aizawa S; Matsuo I, Otx2 is required to respond to signals from anterior neural ridge for forebrain specification. Copyright 2002

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4104Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4104_wholemount_strong_3D_1.wlz
4104_wholemount_moderate_3D_1.wlz
4104_wholemount_weak_3D_1.wlz
4104_wholemount_possible_3D_1.wlz
4104_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4104_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
telencephalon
detected detected
Expression in most of telencephalic region.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1340507
Entity Detected:Foxg1, forkhead box G1 ( MGI:1347464)
Sequence:sense strand is shown

>MGI:1340507
CTAGCCTTTAAGCGCGGGGCACGGCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCTCCCTCT
ACTGGCCCATGTCGCCCTTCCTGTCCCTGCACCACCCTCGCGCCAGCAGCACTTTGAGTTACAACGGGAC
CACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAAC
CACTCCTTCTCCACCGCCAACGGGCTGAGCGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGC
ACCACCTCACGGCCGCTGCGCTCGCCGCCTCCGTGCCCTGCGGCCTGTCGGTGCCCTGCTCCGGGACCTA
CTCCCTCAACCCCTGCTCCGTCAACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCCACGTCCCGCAC
CCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCTCCTCTACGTCGCCGCAGG
CCCCCTCGACCCTGCCCTGTGAGTCTTTAAGACCCTCTTTGCCAAGTTTTACGACAGGACTGTCCGGGGG
ACTGTCTGATTATTTCACACATCAAAATCAGGGGTCTTCTTCCAACCCTTTAATACATTAACATCCCGGG
GACCAGACTGTAAGTGAACGTTTTACACACATTTGCATTGTAAATGATAATTAAAAAATAAGTCCAGGTA
TTTTTTATTAAGCCCTTCCCCCCATTTCTGTACGTTTGTTCAGTCTTTAGGGTTGTTTACTATTCTAACA
CGGTGTGGAGTGTCAGCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGTCAA
ATTATAGTAGAATGTGTATCTAAATAGTGACTGCTTTGCCATTTCATTCAAACCTGACAAGTCTATCTCT
AAAGGCTGCCAGATTTCCATGTGTGCAGTATTATAAGTTATCATGGATCTATCTGGTGGACGCAGGCCTT
GAAGAACAACCTAAATTATGAAGAGAGTTTTAAAATGTTAAACTGTAATTTGTATTTAAGAATTTGTAGT
AAAGGTGCCCAAGAAATTATATTGGCCATTTATTGTTTTGTCCTTTTCTTTAAAGAACTGTTTTTTTCCT
TTTGTTTACTTTTAGACCAAAGATTGGATTCTAGCAAATGCACTTGGTATACTAAGTATTAAAACAAGCA
AACAAACAAACAAAAAAAGGAAGGTTGTTTAGTTTGGCAACACTGCCCATTCAATTGAATCCGAAAGGAC
AAAATTAAGGATTGCCTTCAGTTTGTGTTGTGTATATTTCGATGTATGTGGTCACTAACAGGTCACTTTT
ATTTTTTCTAAATGTAGTGAAATGTTAATACCTATTGTACTTATAGGTAAACCTTGCAAATATGTAACCT
GTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTTAAAAATTCTTGATTGTGATACT
GTGGTCATATGCCCTTGTTTGTCACTTACAAAAATGTTTACTATGAACACACAGAAATAAAAAATAGGCT
AAATTCATATAT
nt 1265 - nt 2816 of M87634.1
Notes:The Foxg1 probe used in this study by Tian et al., 2002 [PMID:11820816] was previously described by Tao and Lai, 1992 [PMID:1350202] as corresponding to a region "containing the BF-1 [Foxg1] cDNA from the NheI site at nt 1265 to the 3' end. This probe does not contain the sequence encoding the DNA-binding domain." This is a rat clone
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:involves: C57BL/6 * CBA
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Tian E; Kimura C; Takeda N; Aizawa S; Matsuo I, 2002 [PMID:11820816] , Indexed by GXD, Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1006/dbio.2001.0531] [ PMID:11820816] Tian E, Kimura C, Takeda N, Aizawa S, Matsuo I 200 Otx2 is required to respond to signals from anterior neural ridge for forebrain specification. Dev Biol (242):204-23
 [ doi:10.1016/0896-6273(92)90210-5] [ PMID:1350202] Tao W, Lai E 1992 Telencephalon-restricted expression of BF-1, a new member of the HNF-3/fork head gene family, in the developing rat brain. Neuron (8):957-66
Links:MGI:2179001 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI