EMAGE mouse gene expression spatial database

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EMAGE:4109

2010317E24Rik RIKEN cDNA 2010317E24 gene ( MGI:1919330)
TS15 (9.5 dpc)
in situ hybridisation

Data Images


Figure 2C. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2004.08.007] Gene Expr Patterns 5: 171-8, Murata T; Furushima K; Hirano M; Kiyonari H; Nakamura M; Suda Y; Aizawa S, ang is a novel gene expressed in early neuroectoderm, but its null mutant exhibits no obvious phenotype. Copyright 2004.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4109_wholemount_strong_3D_1.wlz

4109_wholemount_moderate_3D_1.wlz

4109_wholemount_weak_3D_1.wlz

4109_wholemount_possible_3D_1.wlz

4109_wholemount_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4109_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

caudal neuropore

weak

Authors report reduced expression in caudal neuropore region (compared with previous stages of development).

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:3513261
Entity Detected:	2010317E24Rik, RIKEN cDNA 2010317E24 gene ( MGI:1919330)
Sequence:	sense strand is shown >MGI:3513261 GCTGCTGAAAGCCGACGGCGGCCAGCGGGATCAGGCACGCGTCGCGGCCCGGCCTGGGGACCAGTCGTCC CTGCAGCAGCGCCTGATGTTCGCACCGGCCGATGAGCCGCGGACTGTCCTGGAGAGAAAGCCTCTGCCTC TGAGTGCGTGCCCTGCTTCTGGTGGCCCCAGTGGCACCTCCCGGAACCCTGAGCTGTTATGTGTCCCGGT GGAGGCGGCGTCCTGCCCCACAGAGACCGAGCGGCCCCTGAGCAAGGCGCTGGAGCAAATCCCCAGCGCG GATTTGGGTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCCC GAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTGTTGAAGCAGATGAAGGAGTT AGACCAGGAACAGGAGGTGCTTCTGCAGGGCCTGGAGATGATGGCACGGGGCCGAGACTGGTACCAGCAG CAGCTGCAGCGTGTGCAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCTGCAGACTTTGGGGCTG AAGGAAGCCCCCGCCCTCTGGGGAGGTTGCTGCCCAAAGTACAGGAGGTGGCCCGGTGCCTGGGGGAGCT GTTGACTGCAGCCTGCTCTGGCAGAGTGAGTGCTCTGGAGGCTGCCTGGCATCCCTTGTCCTTGTTCTGG ATGCTATGCCAGGAAAGGTCTGGCTCACTGTGTACTTCCACAGGCTCTGCCTTCGTCCTCTTTAGGGCCC CTGGGCCCTCCCTCACCCTCAACTCCAGTCTGGCAGCAACAGACCATCCTCATGCTGAAAGAACAGAACC GGCTTCTCACTCAGGTGAGGTGTGGGAAGATGGGGCTGGGGCTGGAGGCCCAGCAAACCCTGACCGCCTG CCTGCCTGCTCGCCTGCCCAGGAGGTGACTGATAAGAGTGAGCGCATCACGCAGCTGGAGCAGGAGAAGT CTGCACTCATCAAGCAGCTGTTTGAGGCCCGAGCGCTCAGCCAGCAGGATTCGGGACCTCTGGACTCCAC TTTCATCTAGTTGGTTGTACCTCTCTAGGACAAGTGCACACAGACTTAGCTTCAGCTCCATGACACTGCC GGGAGCCTGTCTTCTGACTGAAGACCACCAGGGCTTAGACCTCAGAGCCCTCAAGGAGGCAGCTGCCTCC AGACTTGGGTGCTGCTAGAAATGTACTCTGCCGGAAGCTGCCACTTGCCACTGTCAGTGGGTGGCGGAGG ATCATCCTCACGTTTACCTGATTTCAGGCAGCCCCTACAGAGAAGGGGGCATGTTTACGTCTGTCCTGAT CCACCTGGCAGGGTTTCCTGGGATCACTGGCTTAGTAAAAAGTACTGGTCAAAAAAAAAAAAAAAAAAAA A
	nt 379 - nt 1779 of BC070477.1
Notes:	The 2010317E24Rik probe used in this study by Murata et al., 2004 [PMID:15567712] was "a 1433 bp fragment including the 3' part of the ang (2010317E24Rik) gene (38-391 a.a.) and its 3' untranslated region". Editor's Note: subsequent information held in GenBank suggests the 2010317E24Rik protein is longer that reported in this publication (e.g. AAH70477.1 which is 441aa in length). Therefore this probe presumably covers the 3'UTR and sequence encoding the most 353 C-terminal amino acids (i.e. nt379-1779 of BC070477.1)
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	9.5 dpc
Theiler Stage:	TS15
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Murata T; Furushima K; Hirano M; Kiyonari H; Nakamura M; Suda Y; Aizawa S, 2004 [PMID:15567712] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/j.modgep.2004.08.007] [ PMID:15567712] Murata T, Furushima K, Hirano M, Kiyonari H, Nakamura M, Suda Y, Aizawa S 2004 ang is a novel gene expressed in early neuroectoderm, but its null mutant exhibits no obvious phenotype. Gene Expr Patterns (5):171-8
Links:	MGI:3513265 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source