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EMAGE:4119

Foxf2 forkhead box F2 ( MGI:1347479)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4119 EMAGE:4119
Foxf2_e9.5_rls Foxf2_e9.5_lls

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4119Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4119_wholemount_strong_3D_1.wlz
4119_wholemount_moderate_3D_1.wlz
4119_wholemount_weak_3D_1.wlz
4119_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4119_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
embryo
detected detected
regional
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:FOXF2_T7
Entity Detected:Foxf2, forkhead box F2 ( MGI:1347479)
Sequence:sense strand is shown

>FOXF2_T7
CTTGAAGGCCACTCTGCTCTCCCTCTTCTGCCTTCTTCTCCTCTCCCCTCCGAGAGGGGCAGCCAGGAAC
TGCAACGGACTCACACTGTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAA
TACCCAAGGGAGTTCTGCTCACCGATATTTGCCCGGCCCCTGGAAGAGGAAACCTTTCGAAAGCTAATAT
CCCAGAAGAGCGACAGACAGAGGAGGTGACTACATGTAAGACATATGTTACTGTGTGGAGGACATAAAAC
TTTTCAGTTCTGGGGTGGCCATTGCATTCACTAATCAGGGTCTGAAAAGGGAGGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGCTTTTCAAAATTGCAGTGCTAAAAGCACACAATTTCAAGAAAGCCTTCTC
TAGTTCCCTGGCTCAGTAGGACATTTCTTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATAC
AGGTGCC
nt 31638123 - nt 31638619 of NC_000079.4
Notes:These primers were used to generate the in vitro transcription template by PCR of mouse whole genomic DNA. They contain T7 or T3 promotor sequences and amplify a region corresponding to a portion of the 3'UTR. T3 forward primer (sense) 5'-AATTAACCCTCACTAAAGGCTTGAAGGCCACTCTGCTCT-3' T7 reverse primer (antisense) 5'-TAATACGACTCACTATAGGGGCACCTGTATCCGAAGAAG-3'
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:CD-1
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Jacqueline Ramsay, David R FitzPatrick
Principal investigator:David R FitzPatrick, Medical Research Council, Human Genetics Unit MRC Western General Hospital Crewe Road, Edinburgh, Scotland EH4 2XU
Submitted by:Jacqueline Ramsay, Medical Research Council, Human Genetics Unit MRC Western General Hospital Crewe Road, Edinburgh, Scotland EH4 2XU
Experiment type:screen
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceFACEBASE