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EMAGE:4127

Bcas3 breast carcinoma amplified sequence 3 ( MGI:2385848)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4127
Figure 5B. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2005.06.002] Gene Expr Patterns 6: 225-34, Siva K; Inamdar MS, Rudhira is a cytoplasmic WD40 protein expressed in mouse embryonic stem cells and during embryonic erythropoiesis. Copyright 2006.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: a: aorta, ba: branchial arches; h: heart; isv: intersomitic vessels; m: mesenchyme.
Expression Pattern Description
Spatial Annotation:
EMAGE:4127Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4127_wholemount_strong_3D_1.wlz
4127_wholemount_moderate_3D_1.wlz
4127_wholemount_weak_3D_1.wlz
4127_wholemount_possible_3D_1.wlz
4127_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4127_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
head mesenchyme
detected detected
trunk somite
detected detected
otocyst
detected detected
trunk mesenchyme
strong strong
regionalPosterior to the forelimb buds, expression was in the mesenchyme adjacent to the intersomitic vessels.
cardiovascular system
detected detected
regionalExpression is in a few major vessels and a few blood cells.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3614356
Entity Detected:Bcas3, breast carcinoma amplified sequence 3 ( MGI:2385848)
Sequence:sense strand is shown

>MGI:3614356
CAAACAGTGAGCCTGAAGCTGGAGAACAGCGTTTACCGGCGGAGCGGCCGGTCTCATGAATGAAACAATG
GCTACAGATTCTCCTCGGAGACCCAGTCGTTGTACTGGCGGAGTCGTGGTCCGCCCTCAGGCCGTCACGG
AGCAGTCCTACATGGAGAGCGTCGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGGTCTCC
CCTAACAGAAGAAAAGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAGATCTGAACGACACATCACGG
AATCTAGAATTTCATGAACTGCATAGCACTGGAAATGAGCCTCCTCTGCTGGTTATGATCGGCTACAGTG
ACGGAATGCAGGTCTGGGGCATCCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCC
AGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGATAACTTTGCTGAGAAA
AGACCTCTTCTTGGTGTTTGTAAGAGCATTGGATCTTCAGGCACGACACCACCGTACTGCTGTGTGGATC
TGTATTCACTCCGGACTGGGGAAATGGTCAAGTCCATTCAGTTTAAAACACCCATTTATGATCTTCACTG
TAACAAGCGGATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACAAAA
AAATTTTTTGTCACAAGTTGTTATCCTTGTCCTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCCGCT
GGCTTGCTTATGCAGAAAATAAGCTGATTCGCTGTCACCAGTCCCGTGGAGGAGCCTGTGGAGACAACAT
TCAGTCTTACACTGCCACTGTCCTTAGTGCTGCTAAAACACTGAAAAGTGGCCTGACGATGGTTGGGAAA
GTGGTGACTCAACTGACAGGCACACTGCCCTCAGGGGTGACAGAAGATGACGTTGCCCTACACTGCAACT
CAAGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTCATAGACACTGAGACGGTTGGAGAGGGCCAGGT
GCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATGT
TGTATGGCTTTTAATACTAGTGGAATGCTTTTAGTCACAACAGATACTCTTGGCCATGACTTTCATGTCT
TCCAAATCCTGACTCATCCTTGGTCATAATCACAGTGTGCTGTCCATCATCTGTACACACTTCACAGGGG
AGAGACCGAGGCCAAAGTTCAGGACATCTGTTTCAGCCATGATTGTCGTTGGGTGGTGGTCAGTACCCTC
CGGGGTACGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCCAGCCTTGTGTCCGCACACACATGTCAC
CACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGAACAAGAGCTGGA
CNGTAAACAAGGCGGGGGCNNCCCAGGGAAAGGGGAAA
nt 1 - nt 1508 of AF313800.1
Notes:The Bcas3 (rudhira/K20D4) antisense probe used in this study by Siva & Inamdar, 2006 [PMID:16099728] was "generated from the AF313800 cDNA clone" by cutting with BglI. Editors Note: No BglI sites are contined within the insert of AF313800.1 therefore this site is presumed to be found in the vector.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Siva K & Inamdar MS, 2006 [PMID:16099728] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.modgep.2005.06.002] [ PMID:16099728] Siva K, Inamdar MS 2006 Rudhira is a cytoplasmic WD40 protein expressed in mouse embryonic stem cells and during embryonic erythropoiesis. Gene Expr Patterns (6):225-34
Links:MGI:3614357 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI