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EMAGE:4147

Six6 sine oculis-related homeobox 6 homolog (Drosophila) ( MGI:1341840)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4147 EMAGE:4147
Figure 3C. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(99)00017-9] Mech Dev 83: 155-9, Lopez-Rios J; Gallardo ME; Rodriguez de C rdoba S; Bovolenta P, Six9 (Optx2), a new member of the six gene family of transcription factors, is expressed at early stages of vertebrate ocular and pituitary development. Copyright 1999. Figure 3D. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(99)00017-9] Mech Dev 83: 155-9, Lopez-Rios J; Gallardo ME; Rodriguez de C rdoba S; Bovolenta P, Six9 (Optx2), a new member of the six gene family of transcription factors, is expressed at early stages of vertebrate ocular and pituitary development. Copyright 1999.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4147Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4147_wholemount_strong_3D_1.wlz
4147_wholemount_possible_3D_1.wlz
4147_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4147_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
future neurohypophysis
detected detected
eye
detected detected
diencephalon
detected detected
regionalExpression is in the hypothalamic area.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2389133
Entity Detected:Six6, sine oculis-related homeobox 6 homolog (Drosophila) ( MGI:1341840)
Sequence:sense strand is shown

>MGI:2389133
AGAAGCTGCGTGGACGGCCCCTGGGACCTGTGGACAAGTACCGAGTAAGGAAGAAGTTCCCGCTGCCGCG
GACCATTTGGGATGGCGAACAGAAGACTCACTGCTTCAAGGAGCGCACGCGGAACCTGCTACGCGAGTGG
TACCTGCAGGATCCATACCCTAACCCCAGCAAAAAACGTGAGCTCGCCCAGGCAACCGGACTGACCCCTA
CGCAGGTGGGCAACTGGTTCAAAAACCGCCGACAAAGGGACCGAGCGGCTGCAGCCAAAAACAGACTCCA
GCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGTGCTACGCTCGGAGGGTGAGGGAACGCCTGAGGTGTTG
GGCGTCGCCACCAGCCCGGCCGCCAGTCTATCCAGCAAGGCGGCCACTTCAGCCATCTCCATCACGTCCA
GCGACAGCGAGTGCGATATCTGA
nt 299 - nt 742 of AJ011787.1
Notes:The Six6 (Six9/Optx2) probe template used in this study by Lopez-Rioset al., 19999 [PMID:10381575] was defined as "mouse Six9 (Optx2) from 299 to 742 (Accession No. AJ011787)".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:BALB/c
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Lopez-Rios J; Gallardo ME; Rodriguez de C rdoba S; Bovolenta P, 19999 [PMID:10381575] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(99)00017-9] [ PMID:10381575] Lopez-Rios J, Gallardo ME, Rodriguez de Cordoba S, Bovolenta P 1999 Six9 (Optx2), a new member of the six gene family of transcription factors, is expressed at early stages of vertebrate ocular and pituitary development. Mech Dev (83):155-9
Links:MGI:2429392 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI