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EMAGE:4189

Akr1a1 aldo-keto reductase family 1, member A1 (aldehyde reductase) ( MGI:1929955)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4189
Figure 2M. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(00)00293-8] Mech Dev 94: 271-5, Allan D; Lohnes D, Cloning and developmental expression of mouse aldehyde reductase (AKR1A4) Copyright 2000.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: Scale bar: 1mm. ba, branchial arch; flb, forelimb bud; hlb, hindlimb bud.
Expression Pattern Description
Spatial Annotation:
EMAGE:4189Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4189_wholemount_strong_3D_1.wlz
4189_wholemount_moderate_3D_1.wlz
4189_wholemount_weak_3D_1.wlz
4189_wholemount_possible_3D_1.wlz
4189_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4189_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
strong strong
otocyst
strong strong
fronto-nasal process
strong strong
tail
strong strong
neural tube
not detected not detected
homogeneous
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2674293
Entity Detected:Akr1a1, aldo-keto reductase family 1, member A1 (aldehyde reductase) ( MGI:1929955)
Sequence:sense strand is shown

>MGI:2674293
TTCGGCACGAGGGAATGTGCAAAGTCCCAGCTTTGGCTTCTACTCCCTCTTCTACTTCGCAGGACAGTGG
GGGTCTCCTCCGTCCTGCGCGTAGTTCTGGGAGCCGGGCCCTCGCTCCTCCCTGGGGTGGGGCTGCCGCT
TCTCCGCCCGGACTTAAGTCGGGCCCTGTTGCCTCAGTACTGGAGTGCAGAGCTGAATTCGGGCCACTTT
GTCTTTTCCACAGCCTGTGCTCACTGCCAAGGGGACAATGACGGCCTCCAGTGTCCTCCTGCACACTGGA
CAGAAGATGCCTCTGATTGGTCTGGGGACATGGAAGAGTGAGCCTGGTCAGGTGAAAGCAGCCATTAAAC
ATGCCCTTAGCGCAGGCTACCGCCACATTGATTGTGCTTCTGTATATGGCAATGAAACTGAGATTGGGGA
GGCCCTGAAGGAGAGTGTGGGGTCAGGCAAGGCAGTCCCTCGAGAGGAGCTGTTTGTGACATCCAAGCTG
TGGAATACTAAGCACCACCCTGAGGATGTAGAACCTGCCCTCCGGAAGACACTGGCTGATCTGCAACTGG
AGTATTTGGACCTCTATTTGATGCACTGGCCTTATGCCTTTGAGCGGGGAGACAATCCCTTTCCCAAGAA
TGCCGATGGAACTGTCAGATATGACTCAACTCACTATAAAGAGACCTGGAAGGCTCTGGAGGTACTGGTG
GCAAAGGGGCTGGTGAAAGCCCTGGGCTTGTCCAACTTCAACAGTCGGCAGATTGATGATGTCCTCAGTG
TGGCCTCTGTGCGCCCAGCTGTCTTGCAGGTGGAATGCCATCCATACCTGGCTCAGAATGAGCTCATTGC
CCACTGTCACGCACGGGGCTTGGAGGTGACTGCTTATAGCCCCTTGGGTTCCTCTGACCGTGCTTGGCGC
CATCCTGATGAGCCAGTCCTGCTTGAAGAACCAGTAGTCTTGGCACTAGCTGAAAAACATGGCCGATCTC
CAGCTCAGATCTTGCTTAGATGGCAGGTTCAGCGGAAAGTGATCTGCATCCCCAAAAGCATCAATCCTTC
CCGCATCCTTCAGAACATTCAGGTATTTGATTTCACCTTTAGCCCAGAGGAGATGAAACAATTAGATGCT
CTGAACAAAAATTGGCGGTATATTGTGCCCATGATTACGGTGGATGGGAAGAGGGTTCCCAGAGATGCTG
GACACCCTCTGTATCCCTTTAATGACCCATACTGAGACCTATAGTTTCTCAGCTTCCCTTTCAGTTCTCC
TGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTGTAA
nt 1 - nt 1320 of AF225564.1
Notes:The Akr1a4 probe used in this study by Allan & Lohnes, 2000 [PMID:10842086] was generated from a "full-length AKR1A4 cDNA". See Figure 1 therein and accompanying sequence AF225564.1 deposited in GenBank for the sequence of this cDNA.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Allan D & Lohnes D, 2000 [PMID:10842086] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(00)00293-8] [ PMID:10842086] Allan D, Lohnes D 2000 Cloning and developmental expression of mouse aldehyde reductase (AKR1A4). Mech Dev (94):271-5
Links:MGI:2674298 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE