EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4192

Chrdl1 chordin-like 1 ( MGI:1933172)
TS16 (10 dpc)
in situ hybridisation

Data Images


Figure 2F. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(00)00507-4] Mech Dev 100: 119-22, Coffinier C; Tran U; Larrain J; De Robertis EM, Neuralin-1 is a novel Chordin-related molecule expressed in the mouse neural plate. Copyright 2001.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Note: I-III, branchial arches; drg, dorsal root ganglia; fb, forebrain. Scale bar: 500 microns.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4192_wholemount_strong_3D_1.wlz

4192_wholemount_moderate_3D_1.wlz

4192_wholemount_weak_3D_1.wlz

4192_wholemount_possible_3D_1.wlz

4192_wholemount_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4192_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

1st branchial arch

detected

2nd branchial arch

detected

3rd branchial arch

detected

dorsal root ganglion

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:2676651
Entity Detected:	Chrdl1, chordin-like 1 ( MGI:1933172)
Sequence:	sense strand is shown >MGI:2676651 GCTCCTCTCCTTGGAGCCCCTGAATTGCATTTTGCAGTAGCTCGAAGGAGAAAAAAGTAGAAGATGGATG GCATGAAATACATCATTTCCTTATTTTTCATCTTTGTTTTCCTAGAAGGAAGCAAAACAGAACAAGTAAA ACACTCAGACACATATTGCGTGTTTCAAGACAAGAAGTATAGAGTGGGTGAGAAATGGCATCCCTACCTG GAACCGTATGGACTGGTTTACTGTGTGAACTGCATCTGCTCTGAGAATGGGAATGTGCTTTGCAGCCGAG TCAGATGTCCAAGTCTTCATTGCCTTTCACCCGTGCATATTCCTCATCTCTGTTGCCCCCGCTGCCCAGA CTCCTTACCACCAGTGAACAATAAGGTGACCAGCAAGTCATGCGAATACAATGGAACCACTTACCAACAT GGAGAACTGTTCATAGCTGAAGGGCTCTTTCAGAACCGGCAACCCAATCAGTGCAGTCAGTGTAGCTGCT CGGAGGGGAATGTATACTGTGGTCTTAAGACTTGCCCCAAACTGACCTGTGCATTCCCAGTCTCTGTTCC AGATTCTTGCTGCCGAGTATGCAGAGGGGATGCAGAATTATCGTGGGAACATGCGGATGGTGATATCTTC CGGCAACCTGCCAACAGAGAAGCAAGACATTCTTACCTCCGTTCCCCCTACGATCCTCCACCAAGCAGAC AAGCTGGAGGTCTTCCCCGCTTTCCTGGGAGCAGAAGTCACCGGGGAGCTGTTATAGATTCCCAGCAAGC ATCCGGGACCATCGTGCAGATTGTCATCAATAACAAGCACAAACATGGACAAGTGTGTGTTTCCAATGGA AAGACCTACTCTCATGGAGAGTCCTGGCACCCAAATCTACGAGCATTTGGCATTGTGGAATGTGTACTAT GCACTTGTAATGTCACCAAGCAAGAATGTAAGAAAATCCACTGCCCCAATCGATACCCCTGCAAGTATCC TCAAAAAATAGATGGAAAGTGCTGCAAGGTGTGCCCAGGTAAAAAGGCAAAAGGTGCATTGGCTGGAGGC CCTGCCTTTGGTTGAATGAGATTCACACATAGTCCTATTCAGTCTTCTTTGTTCATCAAAACTATAAATG ACCTGTCTTATAGTTCTAACGATAATAGTTCTAGCAAGAATGAACTTCATCCTTTCGTCTTCTGAGACAC TGATGGTTGCTTTGAAGGAATTAACTACTCAGAGTTTCTTTTGTCTACAATGTCAAACACATGCCAAGTT GCTTATCTTGTTCTTGCTTTTCTAAATTAGAGAGTTTACGTTATCACTGTTTTAGAAAAAGTCACACCTT TCATGGTTTAAATCACCAACTCACTTCAAGACATAATCCAGTACTCTTTTCAGATGAGATATAAATGAGT TACAGTGGAGAGAAATTAGATTCTGATCCAAATGCATCAAATCCACAAGTATCTTACCCCATGTGAACAT TTTAAAGTTTATTACTGTGTTCCACATTGCTATTTTAATTTGCAATTTCTTTTTAAATTTTCTGAGATAT TGTATCTGTATATACTTATGGGGTACAGTATGTTAATTCAATACAAATATACAAGGTATAATTGTCAAAT CAGGGTAATTATCATTCTCTCTCCTCTGATTTTATCCCTAGACTCTTCTAGTCATTTTAAAATTTATCAT CAATTGGGTTTTTGATATGGTAACTCCACTGTGCTAAAGAAACCATTCATTCTAATGGCATTTTAGGATC TACTATCTAACCTCTATCTCCCCTTCATCACCTTTCAACTCTAAAATCCTATAATTATATTATTTCTTCA TTAATTACAAGAACAGTAAAGTATATAAACTGACTTTGCCAGAGTCATGAAACAAATTGATAAGACAATC AAGATGTCAAACCCAGGTCACTTCCAGCCCATTGTCTTTTCTACTTGAAAATGTTGCTGATCTATTCTAA ACACAAATTATTAAAATGGTGGTTTTTAAGACATGAGCTACATAAAAACATTACCCTCTCTACTATTGGC ATTGTAACTTCGGCTTGCTACAGCTTTCCCATGTGATCTAGAACAAGCACCTTCACCTTTATGAGCCTCC ATTTCTTTTTCTTCCAAATGAGATGTTAAAGCAAGTGACTTCCTACAGCCACCACCCCAATCCCAGAATT CCACTATCACTAAATTAGCCATTCCTAGGCACATGAATTTATCATTTCTTAGGCCTTCTGAAAAGAATTT ATGTAAATACAAATGAAAAACAAACACTTTTTAAAATGGAGGTGGATTTATCTCTTCCATTAAGCATTCA CTCCTGCCTAGCAGTCAAGCATGCATTTAGTGTAAATACATGAGTATCTTCATGTGAGCCAATGATTCCT GAGATTGTCTGTACATTGGAATCCCCAGGAAGGTTCTAATAGTACCTGTGCCTCATCTCCAAGAGATTGC AGTCTAATTGATTTGGATTGTGGCATGGGCTTGGACCCCCTTTTTTAGTGCCCCCTTTTATAGTGCCTCC TTTGATGGCAGAAAAGTTTGAGAACAATTGCTGTCTACTCGCAGTGGCTCATGGTCTTGTCCTTTAAAAT GTGGTTTGTGGACCAGCAGCACCTAAGAGATCATTATAAAAGCTGACTCTCAGGTCTCCACCTGCTCTGC ATCCACATCAGCAGTTAAGATCGTCAAGTGATTCTACTTGAAAGTATATTAAAGTTTGGGGAAGTAAAGA TTTAAGATAACTCTAATGGC
	nt 1 - nt 2750 of AF305714.1
Notes:	The Chrdl1 (neuralin-1) probe used in this study by Coffinier et al, 2001 [PMID:11118896] . was "synthesized using the same 2.5 kb fragment subcloned into pKS+, linearized with Not I and transcribed using the T3 RNA polymerase". The "2.5kb fragment" was "isolated from a Rapid-Screen arrayed cDNA library (OriGene) made from E12.5 mouse embryos" when screened using a PCR fragment. Editors note: the authors mention elsewhere in the paper a clone (submitted to GenBank as AF305714.1 - 2.7kb), which is assumed to be the 2.5kb clone eluded to.
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	10 dpc
Theiler Stage:	TS16
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Coffinier C; Tran U; Larrain J; De Robertis EM, 2001 [PMID:11118896] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/S0925-4773(00)00507-4] [ PMID:11118896] Coffinier C, Tran U, Larrain J, De Robertis EM 2001 Neuralin-1 is a novel Chordin-related molecule expressed in the mouse neural plate. Mech Dev (100):119-22
Links:	MGI:2676657 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source