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EMAGE:4198

Arid5b AT rich interactive domain 5B (MRF1-like) ( MGI:2175912)
TS17
in situ hybridisation

Data Images
EMAGE:4198
Figure 3A. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(01)00370-7] Mech Dev 104: 139-42, Ristevski S; Tam PP; Kola I; Hertzog P, Desrt, an AT-rich interaction domain family transcription factor gene, is an early marker for nephrogenic mesoderm and is expressed dynamically during mouse limb development. Copyright 2001.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: Myo, myotome; ED, endolymphatic diverticulum.
Expression Pattern Description
Spatial Annotation:
EMAGE:4198Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4198_wholemount_strong_3D_1.wlz
4198_wholemount_moderate_3D_1.wlz
4198_wholemount_weak_3D_1.wlz
4198_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4198_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trunk somite
detected detected
regionalExpression detected in dermomyotomes.
endolymphatic appendage
detected detected
endolymphatic appendage epithelium
detected detected
rest of otocyst epithelium
detected detected
liver
detected detected
1st branchial arch
detected detected
regionalExpression was detected in the ectoderm and mesenchyme.
2nd branchial arch
detected detected
regionalExpression was detected in the ectoderm and mesenchyme.
thyroid primordium
strong strong
esophagus
strong strong
lung
strong strong
trachea
strong strong
oral region cavity
strong strong
regionalExpression was detected in the lining.
foregut gland
strong strong
regionalExpression was detected in the lining.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2449536
Entity Detected:Arid5b, AT rich interactive domain 5B (MRF1-like) ( MGI:2175912)
Sequence:sense strand is shown

>MGI:2449536
TCAGTGGAAACATATTTATGACGAGTTAGGTGGTAATCCTGGGAGCACCAGTGCGGCCACCTGTACTCGC
AGACACTACGAAAGGTTAATCCTGCCATACGAAAGATTTATTAAGGGAGAAGAAGATAAGCCTCTGCCGC
CAATCAAACCTCGGAAACAGGAAAACAATACGCAGGAAAATGAGAATAAAACAAAAGTCTCGGGAAACAA
ACGTATCAAACAGGAAATGGCCAAAAACAAGAAAGAAAAAGAGAATACCCCCAAACCCCAAGATACATCT
GAGGTTTCATCAGAGCAAAGGGAGGAAGAAGAGACGTTAAGCCACAAAAGCGCCCCCGAGCCTCTCCCTG
CTCCTGAAGTAAAGGGGAAACCAGAAGGGCACAAGGATCTTGGAGCGAGGGCCCCAGTGTCCAGAGCAGA
CCCAGAAAAGGCCAATGAAACTGACCAAGGTTCCAACAGCGAGAAAGAGGCCGAGGAGATGGGAGATAAG
GGCCTTGCCCCTCTGCTTCCAAGCCCTCCCTTGCCTCCTGAAAAAGATTCAGCTCCCACCCCTGGGGCTG
GCAAACAGCCCCTTGCCTCTCCCAGCACCCAGATGGACTCAAAGCAAGAAGCCAAACCCTGCTGCTTTAC
AGAGAGCCCTGAGAAGGACCTCCAAGGAGCACCCTTCTCCAGCTTCTCTGCCACCAAGCCACCACTGACA
AGCCAGAACGAGGCAGAGGAAGAGCAGCTTCCTGCCACCGCCAACTACATTGCCAACTGCACTGTGAAGG
TGGACCAGCTGGGCAGTGACGACATCCACACTGCTCTCAAGCAGACCCCGAAGGTCCTTGTGGTCCAATC
ATTTGACATGTTCAAAGACAAAGACTTGACCGGCCCCATGAATGAGAACCACGGACTTAACTACACGCCC
CTGCTTTACTCCCGGGGCAACCCTGGTATCATGTCCCCATTGGCTAAGAAAAAGCTTTTGTCTCAGGTGA
GTGGGGCCAGCCTCTCCAGCAGCTATCCCTATGGCTCCCCGCCCCCTTTGATCAGCAAAAAGAAACTCAT
TGCCAGGGCAAGACCTGTGCTCGGGTTTGTCCCAGGGCCACCACAGCCAAAGCTC
nt 1366 - nt 2470 of AF169968.1
Notes:The Arid5b (Desrt) probe used in this study by Ristevski et al., 2001 [PMID:11404092] spanned "nucleotide positions 1366-2470" of AF169968.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Ristevski S; Tam PP; Kola I; Hertzog P, 2001 [PMID:11404092] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(01)00370-7] [ PMID:11404092] Ristevski S, Tam PP, Kola I, Hertzog P 2001 Desrt, an AT-rich interaction domain family transcription factor gene, is an early marker for nephrogenic mesoderm and is expressed dynamically during mouse limb development. Mech Dev (104):139-42
Links:MGI:2449547 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE