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EMAGE:4316

Hoxa5 homeobox A5 ( MGI:96177)
TS18 (10.75 dpc)
in situ hybridisation

Data Images
EMAGE:4316
Figure 6A. Copyright: This image is from Li ZL, Dev Dyn 1999 Dec;216(4-5):336-48 and is displayed with the permission of Wiley-Liss, Inc. who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: M = anterior boundary of Hoxa5 expression domain in the paraxial mesoderm.
Expression Pattern Description
Spatial Annotation:
EMAGE:4316Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4316_wholemount_strong_3D_1.wlz
4316_wholemount_moderate_3D_1.wlz
4316_wholemount_weak_3D_1.wlz
4316_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4316_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trunk paraxial mesenchyme
detected detected
regionalThe anterior limit of expression is between the 7th and 8th somite in the paraxial mesoderm. When heat treated the anterior limit of paraxial mesoderm expression shifts to between the 6th and 7th somites.
neural tube
detected detected
regionalThe anterior limit of expression is at the myelencephalon in the neural tube.
tail paraxial mesenchyme
detected detected
The anterior limit of expression is between the 7th and 8th somite in the paraxial mesoderm. When heat treated the anterior limit of paraxial mesoderm expression shifts to between the 6th and 7th somites.
hindbrain
detected detected
regionalThe anterior limit of expression is at the myelencephalon in the neural tube.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1353063
Entity Detected:Hoxa5, homeobox A5 ( MGI:96177)
Notes:The Hoxa5 probe used in this study by Li & Shiota, 1999 [PMID:10633854] was one a set of Hox probes "provided by Drs. R. Krumlauf and P. Gruss" and is of unreported sequence.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:ICR
Age:10.75 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Li ZL & Shiota K, 1999 [PMID:10633854] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1002/(SICI)1097-0177(199912)216:4/5<336::AID-DVDY3>3.0.CO;2-5] [ PMID:10633854] Li ZL, Shiota K 1999 Stage-specific homeotic vertebral transformations in mouse fetuses induced by maternal hyperthermia during somitogenesis. Dev Dyn (216):336-48
Links:MGI:1353308 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI