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EMAGE:4339

Ociad1 OCIA domain containing 1 ( MGI:1915345)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4339
Figure 3G. Copyright: This image is from Mukhopadhyay A, Dev Dyn 2003 Aug;227(4):578-86, and is displayed with the permission of Wiley-Liss, Inc. who owns the Copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: I, II, III, branchial arches; h, heart; rh, rhombomeres. Scale bar = 250 microns.
Expression Pattern Description
Spatial Annotation:
EMAGE:4339Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4339_wholemount_strong_3D_1.wlz
4339_wholemount_moderate_3D_1.wlz
4339_wholemount_possible_3D_1.wlz
4339_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4339_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
future hindbrain
detected detected
optic vesicle
detected detected
heart
not detected not detected
homogeneous
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3579996
Entity Detected:Ociad1, OCIA domain containing 1 ( MGI:1915345)
Sequence:sense strand is shown

>MGI:3579996
CCACGCGTCCGCGCTTGGNAAGCTGCCCTCTTTCCCCTCCCCGCTTCCCGCGTTGTCCGCTGTGCCTGTC
TCTGGGGTCCTCTCCCGGCCTCTACCCCGGGTCCTGCTCCCAGCGTTGCCGCCTCCATCGTGAGGTAGTT
GAAATGTAAAAGTCGGGGCCTGAAGAGATAACTCAGCAGGAACTATGAATGGGAGGGCTGATTTTCGAGA
ACCGAATGCACAAGTGTCAAGACCTATTCCCGACATAGGAGGCGGTTATATTCCGACAGAGGAGGAGTGG
AGACTCTTTGCAGAGTGCCATGAAGAGTGCTTCTGGTTCAGATCTGTGCCGTTGGCTGCCACAAGTATGC
TGATTACTCAAGGATTAATTAGTAAAGGAATCCTGTCAAGTCATCCAAAATATGGTTCAATTCCTAAACT
TCTATTCGCTTGTATCGTGGGGTACTTCGCTGGAAAGCTTTCTTACGTGAAAACGTGCCAAGAGAAGTTC
AAGAAGCTTGAAAACTCCCCCCTTGGAGAAGCACTGCGGTCGGGAGAATTGCGGCGCTCTTCTCCACCAG
GGCACTATACTCAAAAGCCTAAATTTGACTCAAATGTGAGTGGTCAGTCCTCTTTCGGGACATCTCCAGC
AGCAGACAACATAGAAAAGGAGGCGCTTCCTCGTTATGAGCCAATTCCATTTAGTGCTTCTATGAACGAG
TCCACTCCCACTGGTATTACTGACCATATTGCCCAAGGACCTGAGCCCAACCTTGAAGAAAGTCCCAAAA
GAAAAGGTGTTACATATGAGGAATTAAGGAGTAAGAACAGAGAGTCCTATGGAGTAACTTTACCCCACAA
GACTGACCCCTCAGTCAGGCCCATGCAGGAAAGAGTGCCCAAAAAAGAAGTCAAAGTAAACAAATATGGA
GATACTTGGGATGAGTGAAAGACTCCCATCATTGGACCTACTGAAGGCCTTCCTTCCATATCCAGCTTCA
TCCAGGTGTCGTTTGTACCTACATGCTTGGACTCAGCAGCAGATTTCATAAATACAGTTAAAACGAAATC
CTGGTTTGTGTGATTTAACATACGATGCTTTACAGACTCAGATTTTATGTTTGCTATTGTGTAAATGTAC
CAGCCTGGGCACTGAGAACGGTGGGTTTATGCCATAGTTGTGTGCACTTGGTGAAATTGTTTTCAGTTAC
AGGGAGAGACTCATGAAACTCAACTGTGACTCTCGATCAGCCCAGCCCATGTGACGATAACTGATAGTGC
ATGTTGAGGGGGGGAGGGGGGAGCAAGCACACGCCTAGGGCTCAGCTTCGCATCAGTTATTAAAAGGCCT
TTCTCCAGCATTTCTCGAGCATCTTAATGTTTGTGATGAATAAAATGTAAAAACACGGAGCAACTGTCAT
TCACATTTTTATGGCTTTGTTTGAAATTTGCTAATGCGTTTTAATGTAAAGGTCTTATGTAAGTGGTATT
TTAAGCAAAAGAAATTTGTGATGAAATAGACTCCTAATACCC
nt 1 - nt 1512 of AF295358.1
Notes:The Ociad1 (asrij) probe used in this study by Mukhopadhyay et al., 2003 [PMID:12889067] was generated from "full-length asrij cDNA (accession no. AF295358)"
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Mukhopadhyay A; Das D; Inamdar MS, 2003 [PMID:12889067] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1002/dvdy.10332] [ PMID:12889067] Mukhopadhyay A, Das D, Inamdar MS 2003 Embryonic stem cell and tissue-specific expression of a novel conserved gene, asrij. Dev Dyn (227):578-86
Links:MGI:3580010 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI