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EMAGE:4353

Foxi3 forkhead box I3 ( MGI:3511278)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4353
Figure 4G. Copyright: This image is from Ohyama T, Dev Dyn 2004 Nov;231(3):640-6, and is displayed with the permission of Wiley-Liss, Inc. who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: Arrowhead in G indicates the Foxi3 expression in the dorsal part of the eye. mx, maxilla; 1p, 2p, the first and second branchial pouches.
Expression Pattern Description
Spatial Annotation:
EMAGE:4353Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4353_wholemount_strong_3D_1.wlz
4353_wholemount_moderate_3D_1.wlz
4353_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4353_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
1st branchial arch
detected detected
regionalExpression is in the region between the maxilla and mandible.
optic cup
detected detected
regionalExpression is dorsal.
1st branchial pouch
detected detected
2nd branchial pouch
detected detected
3rd branchial pouch
detected detected
4th branchial pouch
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3580867
Entity Detected:Foxi3, forkhead box I3 ( MGI:3511278)
Sequence:sense strand is shown

>MGI:3580867
GGAAGGGTAATTACTGGACTCTGGATCCAAACTGTGAGAAAATGTTCGACAACGGAAACTTCCGTCGGAA
GCGAAGGCGCCGCGCGGAGGCCAGCAGTAACCTTACTGTGCCTTCAGGGACATCAAAATCAGAAGGGCAG
TCCTCAAGACTAAGAGTGAGTGGGAAGCTGGAAGGAGACAGCCCCTCTTCTATCCTGAGGCCATCTCAGT
CACCAGAGCCTCCAGAGGGCACCAAGAGTACTGCCTCCTCTCCTGGAGCATCCACCCTCACCTCCACTCC
GTGTCTCAACACTTTCCTCAGCACCTTTAACACCTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAG
CGAACCCTCCCAGGCAGCCGTCGCCACCTAGGAGGGACCCAGCTGCCCTCCAGCACGTTCCCCAACACCT
CCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGTCTTCCTA
CTACAACCCTTTCTCTGGTGGCAGCAGTGGGGACCAGAGCAGCCCCTTCAGCAGCCCTTTCTACAACTTC
AGCATGGTCAACAGCCTCAT
nt 715 - nt 1294 of XM_144880.5
Notes:The Foxi3 probe used in this study by Ohyama & Groves, 2004 [PMID:15376323] was generated by RT-PCR using the following primers: "5'-GGAAGGGTAATTACTGGACTC-3' and 5'-ATGAGGCTGTTGACCATGCTG-3' (Foxi3, 0.6 kb)".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Staining procedure:alkaline phosphatase + INT/BCIP
General Information
Authors:Ohyama T & Groves AK, 2004 [PMID:15376323] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1002/dvdy.20160] [ PMID:15376323] Ohyama T, Groves AK 2004 Expression of mouse Foxi class genes in early craniofacial development. Dev Dyn (231):640-6
Links:MGI:3580908 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI