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EMAGE:4379

Cthrc1 collagen triple helix repeat containing 1 ( MGI:1915838)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4379
Fig1D. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2006.03.008] Gene Expr Patterns 6: 935-40, Durmus T; Leclair RJ; Park KS; Terzic A; Yoon JK; Lindner V, Expression analysis of the novel gene collagen triple helix repeat containing-1 (Cthrc1). Copyright 2006

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: s - somites.
Expression Pattern Description
Spatial Annotation:
EMAGE:4379Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4379_wholemount_strong_3D_1.wlz
4379_wholemount_moderate_3D_1.wlz
4379_wholemount_weak_3D_1.wlz
4379_wholemount_possible_3D_1.wlz
4379_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4379_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
otocyst
detected detected
trunk somite
strong strong
tail somite
strong strong
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3686520
Entity Detected:Cthrc1, collagen triple helix repeat containing 1 ( MGI:1915838)
Notes:The Cthrc1 probe used in this study by Durmus et al., 2006 [PMID:16678498] is described as follows: Digoxigenin-UTP labeled RNA probes corresponding to the sense and antisense strand of the entire coding region of rat Cthrc1 were prepared and in situ hybridization was performed as previously described. In situ hybridization performed with the HindIII-EcoRI fragment of the coding region of rat Cthrc1 as probe gave similar results (not shown).
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:FVB
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Durmus T; Leclair RJ; Park KS; Terzic A; Yoon JK; Lindner V, 2006 [PMID:16678498] , Indexed by GXD, Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.modgep.2006.03.008] [ PMID:16678498] Durmus T, LeClair RJ, Park KS, Terzic A, Yoon JK, Lindner V 2006 Expression analysis of the novel gene collagen triple helix repeat containing-1 (Cthrc1). Gene Expr Patterns (6):935-40
Links:MGI:3686532 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI