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EMAGE:4428

C130071C03Rik RIKEN cDNA C130071C03 gene ( MGI:2443574)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4428
Supplementary Fig 7L(E10.5). Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.ydbio.2006.05.002] Dev Biol 297: 141-157, Jukkola T; Lahti L; Naserke T; Wurst W; Partanen J, FGF regulated gene-expression and neuronal differentiation in the developing midbrain-hindbrain region. Copyright 2007

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4428Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4428_wholemount_strong_3D_1.wlz
4428_wholemount_moderate_3D_1.wlz
4428_wholemount_weak_3D_1.wlz
4428_wholemount_possible_3D_1.wlz
4428_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4428_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
central nervous system
detected detected
Expression was detected widely in the developing CNS.
midbrain
detected detected
gradedThe is an expression gradient in wild-type embryos in both tectum and ventral midbrain that is lost in Fgfr1 mutants.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:C130071C03Rik cloneA
Entity Detected:C130071C03Rik, RIKEN cDNA C130071C03 gene ( MGI:2443574)
Sequence:sense strand is shown

>C130071C03Rik cloneA
TTAGTATGATACAAAGCAAGTTGGATATGACAATGGCAAACACATAATTTTAATATTGTTTATTTTCCTT
AGATGTTATAGTTAACATATTTACATAAACGACCCAAGATGTAGGCAAAAACTTCAGTAATGTGACTCCA
TTGAGAGCTTTGAGTAAACAATAGGTTTCCCCAGCAAACATCTTATTGCCTTAATTGAACCTCCTTGAGA
AAGAAAAGCACACACTTTGTAATGTAAATGTTAATTGTAGTAGACAATGGTTCTAGGTAAATAGCACCCC
TGGACATGAAGCAAATGAAAGGAATACAGGCACTTAACAATGAAAGCTTGTTTGCACAAACAGTGCTTCC
AAGGTAAATAAGCAAGGGTCTTCTCGACTGCCTCTA
Notes:The C130071C03Rik probe used in this study by Jukkola et al., 2006 [PMID:16782087] was synthesized from the insert of IMAGE:2655939. The authors also use several other identifiers to describe it: NM_177100; Affymetrix probe ID 139205_at; UniProt Q8BH22.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Jukkola T; Lahti L; Naserke T; Wurst W; Partanen J, 2006 [PMID:16782087] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1016/j.ydbio.2006.05.002] [ PMID:16782087] Jukkola T, Lahti L, Naserke T, Wurst W, Partanen J 2006 FGF regulated gene-expression and neuronal differentiation in the developing midbrain-hindbrain region. Dev Biol (297):141-57
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE