EMAGE mouse gene expression spatial database

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EMAGE:4437

Jarid2 jumonji, AT rich interactive domain 2 ( MGI:104813)
TS17 (10.5 dpc)
in situ hybridisation

Data Images


Fig2G(left). Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.ydbio.2006.05.002] Dev Biol 297: 141-157, Jukkola T; Lahti L; Naserke T; Wurst W; Partanen J, FGF regulated gene-expression and neuronal differentiation in the developing midbrain-hindbrain region. Copyright 2007

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Image annotations: white arrowhead - midbrain-hindbrain boundary.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4437_wholemount_strong_3D_1.wlz

4437_wholemount_possible_3D_1.wlz

4437_wholemount_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4437_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

brain

detected

regional

Expression is as a narrow stripe near the midbrain-hindbrain boundary.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Jarid2 probeA
Entity Detected:	Jarid2, jumonji, AT rich interactive domain 2 ( MGI:104813)
Sequence:	sense strand is shown >Jarid2 probeA AGTGGCGAAGGTTTGCATGCGGCGACTGTTGGGCGAATCTGGTTTTGGGGGAAGAGGAAGAAAAGTCGGA TTACAAGATCAACCACCACCAACAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCTT TAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAAAGACCCA AGAGGAATATCATTCAGAAGAAATACGATGACAGCGATGGGATCCCGTGGTCAGAAGAGAGAGTTGTACG AAAAGTCCTGTATTTGTCCCTAAAGGAATTCAAGAATGCACAGAAAAGGCAGCATGGGGAAGGCCTTGCC GGGAGCCTGAAGGCGGTAAATGGGCTTCTTGGTAATGCCCAGGCTAAGGCACTAGGACCAGCCTCAGAGC AGTCAGAGAACGAGAAGGATGATGCCTCCCAAGTGTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTT TGAAGAAGGGCCGTCGAGGAAAAGGCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAATCTCAGCCGAAT AGTCCCAGCACAACTCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCAGCTACTCAAATTTCTGACC TCTCTAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGCTGCC CAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAAGAGGAAGATGATGAGACGGAA GATGTCAAAGCAACCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGAAAGGAAAAACCCATA AGCATGTACACAACGGGCACGTTTTCAATGGCTCCAGTAGGTCAGCACGGGAGAAAGAGCCTGCTCACAA ACACAGAAGCAAAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAGGGCAGACAGCCGGAGAGAA CAGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCCAAGGGACTTGCTGCCAACC ACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTACGGAAACAGGTGTCTAAGGTAAATGGAGTCAC TCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCAAAAAGATCCGAGAAGTCAGACCTTCACCATCC AAAACTGTGAAGTACACTGCCACAGTGACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGG TCAAGGAAACCAAACCCAACCACCACAAACCCAGTTCAGCTGTCAACCACACAATCTCAGGGAAAACTGA AAGTAGCAATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGGGGGGCGTCCAAGTCCACCGGGCCTGCT GCCAGTGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCGGCAGC TGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAAGTGGACAAGCCGCAGTCACC CCCCAAGAAGATGAAGGGGGTGGCAGGCAATGCTGAAGCCCCTGGCAAAAAGGCCTCAGCGGCTTCAGGA GAAAAGTCTCTGCTGAATGGACACGTGAAGAAGGAAGTGCCCGAGCGAAGTTTGGAAAGGAATCGGCCAA AGCGGGCCGCGGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGACAGAGGGCACCCCCTGTGA AAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCATGACCCACAGGGCAAGCCAGAGAAGGGG AGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAGGCCCTCCGCCAAGGAGTTCCACG ACCCGCTCATCTACATCGAGTCAGTACGTGCTCAGGTGGAGAAGTACGGGATGTGTCGCGTGATTCCCCC TCCAGACTGGCGGCCAGAGTGCAAGCTCAACGATGAGATGCGCTTTGTCACGCAGATCCAGCACATCCAT AAGCTGGGCCGGCGCTGGGGCCCCAACGTGCAGCGGCTAGCCTGCATAAAGAAGCACCTCAGATCTCAGG GCATCACCATGGATGAGCTCCCCCTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGAT TAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGC ATTCCCAAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATG ACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCTGGAAAA GCGCAAAGGGCCATTAGAGGGGCACACGGAGAGCGACCACCACAAGTTCCACTCCCTGCCCCGCTTTGAG CCCAAGAATGGGCTCGTCCACGGTGTCACACCTAGGAATGGATTCCGTAGCAAGCTCAAGGAGGTGGGCC GGGCCCCACTGAAGACGGGCCGGCGGCGGCTGTTCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAGGAAGA AGACAAAGGTGTCCTCAATGACTTCCACAAGTGCATCTATAAGGGAAGATCTGTTTCTCTAACAACTTTT TATCGAACAGCAAGAAACATCATGAACATGTGTTTCAGCAAGGAGCCCGCACCAGCAGAGATTGAGCAAG AGTACTGGAGGTTAGTGGAAGAGAAGGACTGTCATGTGGCAGTTCACTGCGGAAAGGTGGACACTAATAC CCATGGCAGCGGGTTCCCGGTGGGAAAATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTCCTC CCAAATAACACAGGGTCCATCCTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTAAATA TTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATTGACTACTTACA CACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAGGACGTAGTCCAC ACTCTGCTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATGATCTCCCCAGAGG TGCTGTGCAAGAAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGTGGGCAGTTTGTCGTCTGCTTCCC GGGATCCTTTGTGTCCAAAGTATGTTGTGGCTACAACGTCTCAGAGACAGTGCACTTTGCTACCACCCAG TGGACAAGCATGGGCTTCGAGACTGCCAAGGAGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGG AGAAGTTGCTCTACCAGATTGCACAAGCAGAAGCAAAAAAGGAAAATGGTCCCACCCTCAGTACCATCTC AGCCCTTCTGGATGAGCTCAGGGATACAGAGCTGCGGCAGCGCAGGCTGTTGTTCGAGGCTGGCCTTCAC TCTTCTGCACGCTATGGCAGCCACGACGGCAACAGCACAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGT GGCTACAGCTGGAAACTTCAGAAAGGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCCATGGTGGT ACAGGAGAATGAGAATGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAGAAGCAGAAGTCTTGC CGTGGGCTGAAGCTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACCAGATATGTGGCA AAGTGTCTGGCAAACACGGTGGCATCGAGAACTGTCTCAACAAACCCACACCAAAAAGAGGTCCCCGCAA GAGAGCGACCGTGGATGTGCCGCCATCTCGGCTCCCATCCTCATGAAGATGCCGAACCCATGGTCACTTA TATATTTTTTGTAATTACTATATTCTAGTTTGGAGTACTTGCTGTAGGATACAAGCTGTCTTTGCACTAG CTCTAAAGAAGAATTTCTTCTGGTTTTAGAGAACTGATTTTGTTTTAGCATTAAACTGTTCAAGTTTTTG TACGTAGATATCTAGATACTGCAGTCAGGTTTGGAAGCTGCCGTACACTCACTGTCTAAAACCCTTGAGG GGCTGTATTAATTTGTATCGCCCCATGGCTGTGAAATGCCTTTTTTTTTGTTTGTTTGTTTTTGTTCTGT TTTGTTTGGTAACTGTTGAGGAATAAAGGCTTTTTAACCCATTTTTGAAGATGGTGAAGTTTGGAGAACA AATTTTAAAACCATCAGTCAGATGAGATTTTTCTAGATTGGAAAAGGGATAGAAGATACACACACACACA CACACACACACACACACAGAAAAAAGAAAACTTGAAATGGCTTTACTTTGGCTGTCTTTTCTTCTGTCAT GTGCGAAGGGAGTTTGTAACTTTTGGAACCGGAGAGCCCTGTTTCTTTGGCTGGGCGGTTATGGCAGCTG AAGGCAAACTGTGAGGTTTGAGTGACGAGGTTCTCATACCAGCACATCACTATGCATCCGTTCGAGGGAG AGAGAGACAAAGACAAAGACTGCCTGCCTTGGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGG AAATCCATTCTGTTATTTTTTTTTGGTGCTGTTGGCTACTTTATCAAAAAAACAAAAAACAAAAAAACAA AAAACCCTTCAATAGCATCCTTGAGGAAAAGGAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCATG TGCAATTTCCCGACATTCCACCTCCATCTCTGCTTGTGTCCCTCACATCAGCATTAATCTTTGTTTCCCT CACACTTAGAGCCACTAAGTCTGCAGTTCTTTTTGAATGTGAAACACATCTGTGCTCCTCTTGTCTATTT TTTCTCTTCATGTTTTAACAAAAAAAAAAAAAAAAAAAA
	nt 1 - nt 4939 of BC060695.1
Notes:	The Jarid2 (Jmj/Jumonji) probe used in this study by Jukkola et al., 2006 [PMID:16782087] was synthesized from the insert of IMAGE:6406875.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	10.5 dpc
Theiler Stage:	TS17
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Jukkola T; Lahti L; Naserke T; Wurst W; Partanen J, 2006 [PMID:16782087] , Indexed and Spatially Mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1016/j.ydbio.2006.05.002] [ PMID:16782087] Jukkola T, Lahti L, Naserke T, Wurst W, Partanen J 2006 FGF regulated gene-expression and neuronal differentiation in the developing midbrain-hindbrain region. Dev Biol (297):141-57
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source