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EMAGE:4523

Lypd1 Ly6/Plaur domain containing 1 ( MGI:1919835)
TS18 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4523
Fig 2A. [doi:10.1016/j.mcn.2005.09.010] Dessaud E; Salaun D; Gayet O; Chabbert M; deLapeyriere O. 2006. Identification of lynx2, a novel member of the ly-6/neurotoxin superfamily, expressed in neuronal subpopulations during mouse development. Mol Cell Neurosci. 31(2):232-242.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4523Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4523_wholemount_moderate_3D_1.wlz
4523_wholemount_notDetected_3D_1.wlz
4523_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4523_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
1st branchial arch
detected detected
lynx2 is detected in branchial arches (1 to 3)
2nd branchial arch
detected detected
lynx2 is detected in branchial arches (1 to 3)
3rd branchial arch
detected detected
lynx2 is detected in branchial arches (1 to 3)
neural tube
detected detected
regionallynx2 is detected in the cervical neural tube.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Lypd1 probeA
Entity Detected:Lypd1, Ly6/Plaur domain containing 1 ( MGI:1919835)
Sequence:sense strand is shown

>Lypd1 probeA
GTCTCTCACCTTCCCGAGTCTCTTCTGGGTGTCCTTTTATTCTGGGTAGACAAGGGAGTCTTTTTGTTCC
CTCCTTTCAAGTAACGCAAGATTGCCGTGCACAAATACTTTTGTAAGCTCTGAACCAATTCATTCTGAAT
TTCTGTGTGTAGTTGAAGAAAAAAGCATGGAGCAGAAAGTCCAGACCCTCCCATCCCAATCTGGTTAACC
ACCGCCAAGGCTAGCCTGGAAGAACCAGCCCTTAGAAGTCATTGAGATACGCATCTGCCTTTCCCAAAGC
CTTGAGCTTCCATTCTGTCCCAGTAGGAGTCACAGTCTATTCAGAGACTGCTGCTGCGTGAAGGTAACTT
TGCTTTTGCGGGAGGGGAGAGCCAGTTTCGGCTCAAGGCTTCTGAACTTGCCATTCATACTTCCTGCTCC
TGTAAACTATTTTCTGGGGTGGACCCAGCTGGTTTGGTCTCTGAGCCAGTCTGTGGTGACTCAGGACTCA
AGGGCTGGGGCTTAGCCTCTCCAGGCTTGGCCTCAGTCTGAAAAGTGCTTAAGAAAACCTTGTTAGTTCT
CCTGGAGGAAGAGTTACTGCGCCGGGAGGCTAGGAAGATGAGGGGGCTGCGGGCTGAGCTGGTGCTGTCC
TTGGTGGAGATGAAGCGGGCACGCTGGCGTTTCTCTTGGTTGGCATGCTGCAGAGTCAGGCGGCAGCAGA
GCACCTGCCAGAACACCTTCCGGAACTGCTGAGAGGACACGTTGTAGAGGAGAGGGTTGACCACAGAGCT
GAGGTAGAAGAAGGTATCAGAGAAGGGCAGGAGGATCATGTATGCCCTGAAGTACGTTCTGGTCCAGTCA
TGTTTGGGTTTTGCTGCAGCCATGATCCGTCGGATCTGATTGGG
nt 799 - nt 1682 of NM_145100.2
Notes:The Lypd1 (Lynx2) probe used in this study by Dessaud et al., 2006. [PMID:16236524] corresponds "to nucleotide 799-1682 sequence (NM_145100) coding for 3'UTR". Editors note: There are three versions of NM_145100 - the authors must be referring to version 2 (NM_145100.2) as NM_145100.1 (1490nt in length) is shorter in length than the probe end position given by the authors, and NM_145100.3 was not released until Feb 28 2007 which is after the publication date of this paper.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:CD-1
Age:10.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Dessaud E; Salaun D; Gayet O; Chabbert M; deLapeyriere O. 2006. [PMID:16236524] . Indexed and spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.mcn.2005.09.010] [ PMID:16236524] Dessaud E, Salaun D, Gayet O, Chabbert M, deLapeyriere O 2006 Identification of lynx2, a novel member of the ly-6/neurotoxin superfamily, expressed in neuronal subpopulations during mouse development. Mol Cell Neurosci (31):232-42
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE