EMAGE mouse gene expression spatial database

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EMAGE:4598

Fam101a family with sequence similarity 101, member A ( MGI:1920371)
TS14 (9 dpc)
in situ hybridisation

Data Images


Figure 1R. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2004.09.002] Gene Expr Patterns 5: 439-44, Hirano M; Murata T; Furushima K; Kiyonari H; Nakamura M; Suda Y; Aizawa S, cfm is a novel gene uniquely expressed in developing forebrain and midbrain, but its null mutant exhibits no obvious phenotype. Copyright 2005.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Note: black arrowhead, expression in anterior hindbrain.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4598_wholemount_moderate_3D_1.wlz

4598_wholemount_weak_3D_1.wlz

4598_wholemount_possible_3D_1.wlz

4598_wholemount_notDetected_3D_1.wlz

4598_wholemount_strong_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4598_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

future hindbrain

detected

regional

Expression is in the anterior hindbrain.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:3575276
Entity Detected:	Fam101a, family with sequence similarity 101, member A ( MGI:1920371)
Sequence:	sense strand is shown >MGI:3575276 CGCAGCCAGCTGACCCTGGAGCCTCGCCCACGGGCCCTGCGGTTCGGGAGCACCGCCATCATCTTCCCCA AACTGGCCCGCAGCTCCTTCCGCACCACCCTGCACTGCAGCCTCGGCCAGCCTCGGCACTGGTACTCCTC CAGCCTGCAGCTGCGGCGGTGCGGGGACCCTACGCCCGGTCCCAGCTGTCCTGATGTACTCTGAGGAGTC CAGTCTCTGAGGAGGACCTGAGTGTGGGAGAGGTTCAGGAAAGATGGCCCGGCTACCACCACAGGTTAGG CTGGCTGTGCCGGAGCTCCAGCCTAGAGGAGTCTGTAAATGCATCTTTCATTAGCCTTTAGAGGCTCTAT GGCCTTAAGGGCAGGGCCAAACATGTCCTGGTGTGCCCTTGAGGCAAAGATGGCCCTATGTAGCACAGGG CACTCAGCCATGGCCTGGCTCGAAACCTCATTCTTGGAGAGGCTTGTTTCCAAAATAGGCCATTAAAAAA AAAAAAAAAACGCTCATTCCAGCTGAGAACCGCAGGTGCGTGCGGAGGGGTTGAGCTAACTTTACCTTGA CCTGAGATGGCAAAGGCTGGGGGTACCCAGAACACATTGTCTGCTGTGCAGGGCGCAGCCCTCCAGGGCG GCCCACATGTGCCCCACAAGACGCATTCCAGACTAGCTTAGAACTCTTGAGCCTCAAAGCTCTCTGGCAG GTGCCCTGGGAGGCGTCAAAGCAAATGAGGGGACACGGCCAATAACTGCCTATGGCTGACTCTGGACTTG AGCCTATGGCAGGGCTCAGAACCCCAAGAGAAGCGGAGTCTGTTTTTCTTGGCCTCCCGTTCTTGCTTAG GATGGATCCTACAGTTACACCAGTTTCCCACAACCTGGTGCTGTCCCATGGTGCCCAGGCTAAAATGAGT CCCCGAGTCTACTTTAGAGGTGGAGATGTCCCTTTGTCTCAATTGTCCAGTAGCTAGAAACCTACCTACT GCCGCTGTGGTGGCCCAGAGGGAAGGGACATTCTTTGTGGGGCAAACAGAACCTAAATGACTGATAGATT TCTGTTCATCTATTAGCTTATCTGAGGTGCTCCCTGGTTAAAAGAACAGCCTAAGAAATTAGTGAATTAT CTTAATAAAATATACCCACACAGCCATAAAAAAAAAAAAAAAAA
	nt 505 - nt 1668 of NM_028443.1
Notes:	The 3110032G18Rik (cfm2) probe used in this study by Hirano et al., 2005 [PMID:15661651] is described as "a 1088-bp fragment, corresponding to the 3' region of the cfm2 gene (137-204a.a.) and its 3' untranslated region". Editors Note: the start and end co-ordinates with respect to the mouse 3110032G18Rik cDNA RefSeq sequence NM_028443.1 was deduced using this information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	9 dpc
Theiler Stage:	TS14
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Hirano M; Murata T; Furushima K; Kiyonari H; Nakamura M; Suda Y; Aizawa S, 2005 [PMID:15661651] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/j.modgep.2004.09.002] [ PMID:15661651] Hirano M, Murata T, Furushima K, Kiyonari H, Nakamura M, Suda Y, Aizawa S 2005 cfm is a novel gene uniquely expressed in developing forebrain and midbrain, but its null mutant exhibits no obvious phenotype. Gene Expr Patterns (5):439-44
Links:	MGI:3575280 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source