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EMAGE:4626

Usp9x ubiquitin specific peptidase 9, X chromosome ( MGI:894681)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4626
Figure 5B. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(97)00672-2] Mech Dev 63: 29-38, Wood SA; Pascoe WS; Ru K; Yamada T; Hirchenhain J; Kemler R ; Mattick JS, Cloning and expression analysis of a novel mouse gene with sequence similarity to the Drosophila fat facets gene. Copyright 1997.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4626Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4626_wholemount_moderate_3D_1.wlz
4626_wholemount_possible_3D_1.wlz
4626_wholemount_notDetected_3D_1.wlz
4626_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4626_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
strong strong
limb
strong strong
central nervous system
strong strong
body-wall mesenchyme
not detected not detected
homogeneous
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2446629
Entity Detected:Usp9x, ubiquitin specific peptidase 9, X chromosome ( MGI:894681)
Sequence:sense strand is shown

>MGI:2446629
CCTCAAACAGATAGTAGATTCTTTGACTGAAATGTATTACATTGGTACAGCAATAACTACTTGTGAAGCA
CTTACTGAGTGGGAATACCTGCCACCCGTTGGACCCCGTCCACCAAAAGGATTTGTGGGGCTGAAAAATG
CTGGTGCTACTTGTTACATGAACTCTGTGATCCAGCAACTCTATATGATCCCCTCTATCAGGAATGGTAT
TCTTGCCATAGAAGGCACAGGTAGTGATGTAGATGATGATATGTCTGGGGATGAGAAGCAGGACAACGAG
AGCAATGTTGATCCCAGGGATGATGTGTTTGGATATCCTCAACAATTTGAAAACAAACCACCACTGATTA
AAACAGAAAATAGGAAAAAGTACAATATTGGTGTCCTAAAACACCTTCAGGTTATCTTTGGCCATTTAGC
TGCTTCTCGACTACAGTACTATGTGCCTAAAGGATTTTGGAAACAGTCCAGGCTTTGGGGTGAGCCTGTC
AATCTCCGTGAACAACATGATGCTTTAAAGTCCTTTAATTCTTTGGTGGATAGTTTAGATGAAGCTTTAA
AAGCCTTAGGGCATCCAGCTATGCTAAGTAAAGTCTTGGGAGGTTCCTTTGCTGATCAGAAAATTTGCCA
AGGCTGCCCACATAGGTACGAATGTGAAGAATCTTTTACGACTCTGAATGTAGACATTAGAAACCACCAA
AATCTTCTGGATTCTTTGGAACAGTATGTCAAAGGAGACTTACTAGAAGGAGCAAATGCTTATCATTGTG
AAAAATGCAATAAAAAGGTTGATACTGTAAAGCGCTTGCTAATTA
nt 4900 - nt 5714 of U67874.1
Notes:The Usp9x (Fam) probe used in this study by Wood et al., 1997 [PMID:9178254] covered "nucleotide positions 4900-5714" of GenBank ID U67874.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:CD-1
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Wood SA; Pascoe WS; Ru K; Yamada T; Hirchenhain J; Kemler R ; Mattick JS, 1997 [PMID:9178254] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(97)00672-2] [ PMID:9178254] Wood SA, Pascoe WS, Ru K, Yamada T, Hirchenhain J, Kemler R, Mattick JS 1997 Cloning and expression analysis of a novel mouse gene with sequence similarity to the Drosophila fat facets gene. Mech Dev (63):29-38
Links:MGI:2447079 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI