EMAGE mouse gene expression spatial database

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EMAGE:4676

Bicc1 bicaudal C homolog 1 (Drosophila) ( MGI:1933388)
TS14 (12-15 Somite no.)
in situ hybridisation

Data Images


Fig2M. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(00)00568-2] Mech Dev 101: 267-70, Wessely O; Tran U; Zakin L; De Robertis EM, Identification and expression of the mammalian homologue of Bicaudal-C. Copyright 2001. [PMID:11231089]

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4676_wholemount_moderate.wlz

4676_wholemount_weak.wlz

4676_wholemount_notDetected.wlz

4676_wholemount_strong.wlz

4676_wholemount_possible.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4676_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

hindgut diverticulum

detected

Bicc1 is present in the hindgut.

nervous system

detected

Expression is seen in tissues of neural and mesodermal origins.

mesenchyme

detected

Expression is seen in tissues of neural and mesodermal origins.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Bicc1 probeA
Entity Detected:	Bicc1, bicaudal C homolog 1 (Drosophila) ( MGI:1933388)
Sequence:	sense strand is shown >Bicc1 probeA CGGACGCGTGGGTCGCACCATGGCCTCGCAGAGCGAGCCGGGCTACCTGGCGGCGGCGCAGTCGGACCCC GGCTCCAACAGCGAGCGCAGCACCGACTCGCCGGTGGCCGGCTCCGAGGACGATCTGGTGGCCGCGGCGC CCCTCTTGCACAGCCCGGAGTGGAGCGAGGAGCGCTTCCGCGTGGACAGGAAGAAACTCGAGGCCATGCT CCAAGCTGCAGCTGAAGGAAAAGGCCGAAGTGGGGAAGACTTTTTTCAGAAGATCATGGAGGAGACAAAC ACGCAGATTGCATGGCCGTCCAAACTGAAGATCGGGGCTAAATCCAAGAAAGATCCCCACATCAAGGTTT CTGGGAAGAAAGAGGATGTGAAGGAAGCCAAAGAAATGATCATGTCTGTCTTAGACACAAAAAGCAACCG CGTCACATTGAAGATGGATGTCTCGCACACGGAGCACTCCCACGTCATCGGCAAGGGTGGTAACAACATT AAAAAGGTCATGGAAGACACGGGCTGCCACATCCACTTCCCAGACTCCAACAGGAACAACCAGGCAGAGA AGAGTAACCAGGTGTCTATAGCAGGACAGCCAGCAGGAGTAGAATCGGCCCGAGCAAGGATTCGGGAGCT GCTTCCTTTGGTGCTGATGTTTGAGTTACCGATTGCCGGGATTCTCCAGCCAGTCCCCGATCCCAACACC CCGTCCATTCAGCACATCTCACAAACCTACAGCGTTTCTGTGTCCTTTAAGCAGAGGTCTCGAATGTATG GTGCTACAGTCACAGTACGAGGCTCTCAGAATAACACTAATGCTGTGAAGGAAGGAACAGCCATGCTGTT GGAACACCTTGCGGGAAGCTTGGCCTCCGCCATCCCCGTGAGCACACAACTGGACATAGCAGCCCAGCAT CACCTCTTCATGATGGGCCGGAACGGGAGCAACGTCAAACACATCATGCAGAGGACAGGGGCGCAGATTC ACTTTCCCGACCCCAGCAATCCACAGAAGAAATCCACCGTCTACCTCCAGGGCACCATTGAGTCTGTCTG CCTAGCAAGGCAGTATCTCATGGGGTGTCTTCCTCTGGTGTTGATGTTTGATATGAAGGAAGACATTGAA GTGGACCCACAGGTCATCGCACAGCTGATGGAACAGCTGGACGTCTTTATCAGTATTAAACCAAAGCCCA AACAGCCGAGCAAGTCTGTGATTGTGAAAAGTGTTGAGCGAAATGCCTTAAATATGTATGAAGCAAGGAA GTGTCTCCTCGGACTTGAAAGCAGTGGGGTTTCCATAGCAACCAGTCTATCCCCAGCATCGTGCCCTGCC GGCCTGGCCTGTCCCAGCCTGGATATCTTAGCTTCGGCAGGCCTCGGACTCACTGGACTAGGTTTATTGG GGCCCACCACATTGTCGCTAAATACGTCAGCCACCCCAAACTCACTCCTGAATGCTCTCAACACTTCGGT CAGTCCTTTGCAAAGTTCAAGTTCTGGTACTCCCAGTCCTACACTGTGGGCACCCCCAATCGCTAACACT GCAAGCGCCACAGGTTTCTCTACGATACCACACCTTATGCTTCCCTCTACTGCCCAGGCCACATTAACCA ATATTTTGCTGTCTGGAGTGCCCACATACGGGCACACGGCTCCATCTCCCCCACCTGGCTTGACTCCTGT TGATGTTCACATCAACAGCATGCAGACAGAAGGCAAAAACATCTCTGCGTCTATAAATGGACATGTGCAG CCTGCAAACATGAAATACGGTCCGCTGTCCACTTCATCGCTTGGGGAAAAAGTGCTGAGTTCGAATCATG GTGACCCATCCATGCAGACAGCTGGGCCCGAACAGGCTTCTCCTAAATCAAACTCGGTGGAAGGCTGCAA TGATGCCTTTGTTGAAGTGGGCATGCCTCGAAGTCCCTCCCATTCTGGAAACGCTGGCGACTTGAAGCAG ATGCTGGGTGCCTCCAAGGTCTCCTGTGCCAAGCGGCAGACGGTTGAGCTACTGCAGGGCACGAAGAACT CGCACCTCCACGGCACTGACAGACTACTCTCAGACCCTGAACTGAGCGCCACAGAAAGTCCGCTTGCTGA CAAGAAGGCCCCGGGGAGCGAACGTGCAGCTGAGAGGGCAGCAGCTGCCCAGCAGAAATCGGAGAGGGCC CGCCTGGCCTCGCAGCCAACATATGTCCACATGCAGGCATTTGATTATGAGCAGAAGAAACTATTAGCCA CCAAAGCGATGTTAAAGAAGCCAGTGGTGACTGAGGTCAGAACACCTACGAATACGTGGAGTGGCCTGGG ATTCTCAAAGTCCATGCCGGCAGAAACCATTAAGGAACTGAGGAGAGCCAACCACGTATCCTATAAGCCC ACGATGACCACCGCCTATGAGGGCTCCTCATTGTCCCTCTCAAGGTCCAGCAGTCGTGAGCACCTGGCAA GTGGAAGCGAGTCAGACAACTGGAGAGACCGGAATGGAATAGGCCCCATGGGTCACAGTGAATTCTCAGC ACCAATCGGCAGCCCCAAGCGCAAGCAGAACAAATCAAGAGAGCACTATCTAAGCAGCAGCAACTACATG GACTGCATTTCCTCGCTGACGGGAAGCAATGGCTGTAACCTGAACAGCTGCTTCAAAGGCTCCGACCTCC CCGAGCTTTTCAGCAAGCTGGGCCTAGGCAAATACACGGATGTCTTCCAGCAGCAAGAGATCGATCTTCA GACATTCCTCACCCTCACAGATCAGGATCTGAAGGAGCTGGGAATCACAACCTTTGGTGCCCGAAGGAAA ATGCTGCTGGCAATCTCAGAGCTAAGTAAAAACCGAAGAAAACTTTTTGAACCACCAAACGCATCATGCA CCTCCTTCCTGGAAGGCGGAGCCAGTGGGAGGCTGCCTCGCCAGTATCATTCAGACATTGCGAGCGTCAG TGGCCGCTGGTAGCGGTACCTTCTGGACACGCACCTGCTATCTTGCAAAGGTGGACACGATCCGTGGACA GTCTTCACTGCACTCGCCTGCCCTTGGCACTCGGAGTGTCTGGTATCAGGACCAAAGTGTTGATTTCGTA CCTGTACTTCATGGCCAAAAAAAAAAAAAAAA
	nt 1 - nt 3112 of AF319464.1
Notes:	The Bicc1 (Bic-C) probe used in this study by Wessely et al., 2001 [PMID:11231089] is described as "the full-length mBic-C EST linearized with SalI and transcribed using the T7 RNA polymerase." Editors note: the mouse Bic-C EST sequence ID is mentioned elsewhere in the manuscript as AW240366 (this corresponds to the 5' sequence read from the insert of IMAGE:2655954). The authors also state elsewhere that the GenBank accession number for mBic-C is AF319464. AF319464.1 is presumed to be the 'full-length' insert sequence (of the 'EST' clone IMAGE:2655954) referred to by the authors, as AF319464.1 and AW240366.1 are 100% identical over the length of AW240366.1, and the AW240366.1 sequence is also found at the 5' end of AF319464.1. SalI does not cut within AF319464.1, therefore the probe was made against the full insert.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	12-15 Somite no.
Theiler Stage:	TS14
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Wessely O; Tran U; Zakin L; De Robertis EM, 2001 [PMID:11231089] , Indexed and Spatially Mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/S0925-4773(00)00568-2] [ PMID:11231089] Wessely O, Tran U, Zakin L, De Robertis EM 2001 Identification and expression of the mammalian homologue of Bicaudal-C. Mech Dev (101):267-70
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source