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EMAGE:4703

Nepn nephrocan ( MGI:1913900)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4703
Fig8H. [doi:10.1186/1471-213X-7-92] [PMID:17683524] Copyright: This image is from Hou J; Charters AM; Lee SC; Zhao Y; Wu MK; Jones SJ; Marra MA; Hoodless PA, BMC Dev Biol 2007;7:92, an open-access article distributed under the terms of the Creative Commons Attribution License

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4703Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4703_wholemount_moderate.wlz
4703_wholemount_notDetected.wlz
4703_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4703_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
midgut
detected detected
The expression level is decreased relative to E9 (TS14).
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Nepn probeA
Entity Detected:Nepn, nephrocan ( MGI:1913900)
Sequence:sense strand is shown

>Nepn probeA
GCATTCCTTCCACCACCAAGAGACTCTACATTAGCCACAGCAGAATCCAGCACCTTCAGCTATCTAACTT
CACTGGACTGTTGGCTCTGGAAGATTTTATTCTGCTGGCCAGTGGAACAGAGTCTATTGAAAATGACACC
TTCAAAACTCTGAGTACACTAAAGACTCTAGAACTTTGGAAAAATAAATTGAGACAAGTCCCCAGTGCTC
TCCCAGCCAACCTTGAGGTGTTAAAATTAAATGATAATGCCATATGTGCTCTACGTGGATCAGAGTTTGA
AGGACTGAAGAACTTGAAAGTCCTTGAACTTAAAAACAACTTGATCTCGTCCCTGTCTCCCAGCATGCTC
TCCCCACTTGCCAGTTTGCAGAGTTTGATGGTGGATGGTAACAACATAGAGTCCGTGGTTGGACCTCTGA
GCCTTCCGCATCTCAAGTACATGAGCATGGAGAACAACCAACTCCACCTTATACCAGGGAATGTCTTCAC
TTCCCTACAGAATTTGCAGTTCCTCAGTTTCAGTGGTAATTTTCTAACTAAAATTCCCATAAATCTACCC
AAATCCTTGCTATCTTTAAAGATGGAGAGAAACCAGCTCAAAGTGGTCAGGTTTCGCGATATGAAACACT
TGGAGAACCTGTCCCATCTTTACCTGTCA
nt 163 - nt 821 of NM_025684.2
Notes:The Nepn (5730521E12Rik) probe used in this study by Hou et al., 2007 [PMID:17683524] was generated by RT-PCR amplification from total RNA isolated from E8.0-E8.5 endoderm, using the following primers: forward: GCATTCCTTCCACCACCAAGAG; reverse: TGACAGGTAAAGATGGGACAGGTTC, followed by sequence verification.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Hou J; Charters AM; Lee SC; Zhao Y; Wu MK; Jones SJ; Marra MA; Hoodless PA, 2007 [PMID:17683524] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1186/1471-213X-7-92] [ PMID:17683524] Hou J, Charters AM, Lee SC, Zhao Y, Wu MK, Jones SJ, Marra MA, Hoodless PA 2007 A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE). BMC Dev Biol (7):92
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE