Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4709

Nfatc1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 ( MGI:102469)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4709 EMAGE:4709
Fig2e. [doi:10.1038/32419] de la Pompa JL; Timmerman LA; Takimoto H; Yoshida H; Elia AJ; Samper E; Potter J; Wakeham A; Marengere L; Langille BL; Crabtree GR; Mak TW, "Role of the NF-ATc transcription factor in morphogenesis of cardiac valves and septum." Nature 1998 Mar 12;392(6672):182-6. © Nature Publishing Group. Reproduced with permission from Nature. Fig2f. [doi:10.1038/32419] de la Pompa JL; Timmerman LA; Takimoto H; Yoshida H; Elia AJ; Samper E; Potter J; Wakeham A; Marengere L; Langille BL; Crabtree GR; Mak TW, "Role of the NF-ATc transcription factor in morphogenesis of cardiac valves and septum." Nature 1998 Mar 12;392(6672):182-6. © Nature Publishing Group. Reproduced with permission from Nature.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: NF-ATc mRNA detected in the ventricle (arrow in f) and atrium (arrowhead in f)
Expression Pattern Description
Spatial Annotation:
EMAGE:4709Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4709_wholemount__possible.wlz
4709_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4709_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
primitive ventricle endocardial lining
detected detected
Expression was observed in the endocardium of the ventricles.
outflow tract endocardial tube
detected detected
Expression was observed in the endocardium of the outflow tract.
common atrial chamber left part endocardial lining
detected detected
Expression was observed in the endocardium of the atrium.
right auricular region endocardial lining
detected detected
Expression was observed in the endocardium of the atrium.
common atrial chamber right part endocardial lining
detected detected
Expression was observed in the endocardium of the atrium.
left auricular region endocardial lining
detected detected
Expression was observed in the endocardium of the atrium.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Nfatc1 probeA
Entity Detected:Nfatc1, nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 ( MGI:102469)
Notes:The Nfatc1 probe used in this study by de la Pompa et al., 1998 [PMID:9515963] was "a 1.6 kb 5' NF-ATc cDNA fragment containing exon 3".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:de la Pompa JL; Timmerman LA; Takimoto H; Yoshida H; Elia AJ; Samper E; Potter J; Wakeham A; Marengere L; Langille BL; Crabtree GR; Mak TW, 1998 [PMID:9515963] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1038/32419] [ PMID:9515963] de la Pompa JL, Timmerman LA, Takimoto H, Yoshida H, Elia AJ, Samper E, Potter J, Wakeham A, Marengere L, Langille BL, Crabtree GR, Mak TW 1998 Role of the NF-ATc transcription factor in morphogenesis of cardiac valves and septum. Nature (392):182-6
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE