Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4714

Nkd1 naked cuticle 1 homolog (Drosophila) ( MGI:2135954)
TS18 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4714
Figure 3C. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.mod.2004.08.003] Ishikawa A; Kitajima S; Takahashi Y; Kokubo H; Kanno J; Inoue T; Saga Y, "Mouse Nkd1, a Wnt antagonist, exhibits oscillatory gene expression in the PSM under the control of Notch signaling." Mech Dev 2004 Dec;121(12):1443-5 Copyright 2004. [PMID:15511637]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4714Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4714_wholemount_moderate_3D_1.wlz
4714_wholemount_notDetected_3D_1.wlz
4714_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4714_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
tail unsegmented mesenchyme
detected detected
Expression in presomitic mesoderm
neural tube
detected detected
tail somite
detected detected
trunk somite
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Nkd1 probeA
Entity Detected:Nkd1, naked cuticle 1 homolog (Drosophila) ( MGI:2135954)
Sequence:sense strand is shown

>Nkd1 probeA
GGATCCCCTTCGGTGGCCCAGAAGTCAGAGCTGCCCCCTCGAATCTCCAACCCCACTCGCTCTCGCTCCC
ACGAGCCAGAAGCTGCCCACGTCCCACACCGGAGGCCCCAAGGTGTGGACCCAGGCTCCTTCCACCTCCT
TGACACCCCATTTGCCAAGGCATCAGAGCTCCAGCAACGGCTCCGGGGCACTCAGGATGGGAGCAAGCAC
TTTGTGAGGTCCCCCAAGGCCCAGGGCAAGAACATGGGTATGGGCCACGGGGCCAGAGGTGCAAGAAGCA
AGCCTCCACTGGTACCCACCACCCATACTGTCTCCCCCTCTGCCCATCTGGCCACCAGCCCAGCCCTTCT
CCCCACCCTGGCACCCCTGGGGCACAAGAAACACAAGCATCGAGCCAAGGAGAGCCAGGCGAGCTGCCGG
GGCCTGCA
nt 960 - nt 1387 of NM_027280.2
Notes:The Nkd1 probe used in this study by Ishikawa et al., 2004 [PMID:15511637] was the "exon probe", "a BamHI-PstI 429 bp fragment".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Ishikawa A; Kitajima S; Takahashi Y; Kokubo H; Kanno J; Inoue T; Saga Y, 2004 [PMID:15511637] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.mod.2004.08.003] [ PMID:15511637] Ishikawa A, Kitajima S, Takahashi Y, Kokubo H, Kanno J, Inoue T, Saga Y 2004 Mouse Nkd1, a Wnt antagonist, exhibits oscillatory gene expression in the PSM under the control of Notch signaling. Mech Dev (121):1443-53
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE