Type: | in situ hybridisation probe |
Identifier: | MGI:3723169 |
Entity Detected: | Ccdc88a, coiled coil domain containing 88A ( MGI:1925177) |
Sequence: | sense strand is shown
>MGI:3723169
ATGGCCTTCTCTACTACAGCCATCAACTTTTCAACTGTCAACTCTTCTGCAGCCTTCCGATCCAAGCAGT
TGGTTAATAATAAAGATACTACATCCTTTGAAGACATAAGTCCACAAGGTATTAGTGATGATTCTAGTAC
GGGATCAAGAGTTCATGCTTCAAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACTAGCAATAGCAAT
AATAATGCTTCACTCCATGAAGTCAAAGCAGGTGCAGTTAATATCCAAAGCAGGCCACAAAGCCACAGCA
GTGGAGATTTCAGTCTGCTTCATGATCATGAGACTTGGTCTAGCAGTGGTAGCAGTCCAATTCAGTATTT
GAAAAGACAGACCAGGTCAAGCCCTATGCTCCAGCACAAAATATCTGAAACAATAGAGAGTCGAGCCCAT
CACAAGATGAAAGCTGGCTCCCCAGGAAGTGAAGTTGTTACTCTACAACAGTTTTTGGAAGAAAGCAACA
AGCTTACCTCAATACAGTTGAAGTCCTCGAGTCAAGAGAATCTTTTAGATGAAGTAATGAAAAGTTTGTC
TGTGTCTTCCGACTTTCTGGGGAAAGACAAGCCAGTTAGCTGTACCCTGGCCAGGTCAGTAAGTGGAAAG
ACTCCAGGGGACTTCTATGATAGACGGACAACTAAGCCTGAATTTTTGAGAACTGGTCCTCAAAAGACTG
AAGATGCCTACACCATCAGCTCTGCAGGGAAACCTACACCAAGCACTCAAGGAAAGATAAAACTAGTAAA
AGAAACCTCTGTGTCAAGACAATCAAAAGATAGCAATCCTTATGCCACTTTACCTCGTGCAAGCAGTGTG
ATCTCTACTGCTGAAGGAACAACTCGAAGGACGAGCATCCATGATTTTTTGAGCAAAGACAGTAGACTGC
CCGTGTCAGTCGATTCATCACCACCTACTGCTGGTAGCAGCAGCACTACAGCATCTAATGTGAACAAAGT
ACAAGAGAGCAGAAATTCAAAAAGCAGGTCTAGGGAGCAACAAAGCT
|
| nt 5080 - nt 6106 of NM_176841.3 |
Notes: | The Ccdc88a (HkRP1) probe used in this study by Simpson et al., 2005 [PMID:15882442] is described as follows: "The probe for whole-mount in situ hybridization was amplified by reverse transcriptase (RT)-PCR from E11.5 mouse head total RNA (from Edwina McGlinn, IMB, Brisbane, Australia) with the primers HkRP-C1F (5'-ATGGCCTTCTCTACTACAGCC-3') and HkRP-C1R (5'-AGCTTTGTTGCTCCCTAGACC-3'). This fragment represents homologous mouse sequence corresponding to codons 1427-1768 of the human HkRP sequence and specific to HkRP1." |
Chemistry: | RNA |
Strand: | antisense |
Label: | digoxigenin |