Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4757

Optn optineurin ( MGI:1918898)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4757
Fig7B, [doi:10.1016/j.ygeno.2004.10.011] Rezaie T; Sarfarazi M. Molecular cloning, genomic structure, and protein characterization of mouse optineurin. Genomics 2005 Jan;85(1):131-8 [PMID:15607428]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4757Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4757_wholemount_possible.wlz
4757_wholemount_notDetected.wlz
4757_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4757_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
eye
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3719652
Entity Detected:Optn, optineurin ( MGI:1918898)
Sequence:sense strand is shown

>MGI:3719652
CTGTTGTTTGAGATGCAAAGCAAAGAGGTTAAGGAGCGCCTTAAGGCCCTGACTCATGAAAATGAGAGGC
TGAAGGAAGAGCTTGGAAAATTCAAAGAGAAATCAGAAAAGCCATTGGAAGACCTCACAGGTGGCTACAG
GTATCCCAGAGCCTTGGAGGAGGAAGTGGAGAAGCTGAAGACCCAGGTGGAGCAGGAAGTGGAGCATCTG
AAGATCCAGGTGATGCGCCTTCGGGCTGAAAAGGCAGACCTGCTGGGCATCGTCTCAGAACTGCAGCTCA
AACTCAACTCCGGCGGCTCCTCGGAAGACTCCTTCGTTGAGATCAGGATGACCGAAGGAGAGACTGAAGG
GGCAATGAAGGAGATGAAGAACTGCCCTACACCCACAAGAACAGACCCCATCAGCTTGAGCAACTGTACA
GAGGATGCCAGGAGTTGTGCGGAGTTTGAAGAACTGACTGTGAGCCAGCTTCTGCTTTGCCTAAGGGAAG
GAAACCAAAAGGTGGAGAGACTTGAAGTCGCCCTCAGAGAAGCCAAAGAAAGAATTTCAGATTTTGAAAA
GAAAGCAAATGGCCATTCTTCTACTGAGAAGCAGACAGCGAGGAGAGCAGACAGAGAGAAGGAGGACAAA
GGCCAAGAGAGTGTTGGAAGCGAAGTGGAAACACTGAGCATTCAAGTGACCTCTCTGTTTAAGGAGCTTC
AAGAGGCACACA
nt 400 - nt 1111 of AY071834.1
Notes:The Optn probe template used in this study by Rezaie & Sarfarazi, 2005 [PMID:15607428] is described as "An Optn-specific cDNA fragment as previously described for Northern blot analysis", i.e. a "cDNA fragment of 712 bp (aa 83-320)", "amplified using primers Optn-F (5'-GCCTGTTGTTTGAGATGCAA-3') and Optn-R (3'-TGTGCCTCTTGAAGCTCCTT-5') ".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Rezaie T & Sarfarazi M, 2005 [PMID:15607428] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.ygeno.2004.10.011] [ PMID:15607428] Rezaie T, Sarfarazi M 2005 Molecular cloning, genomic structure, and protein characterization of mouse optineurin. Genomics (85):131-8
Links:MGI:3719679 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI