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EMAGE:4779

Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 ( MGI:1347007)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4779
Figure 2E. [doi:10.1016/j.matbio.2006.08.260] Salo AM; Sipila L; Sormunen R; Ruotsalainen H; Vainio S; Myllyla R, "The lysyl hydroxylase isoforms are widely expressed during mouse embryogenesis, but obtain tissue- and cell-specific patterns in the adult." Matrix Biol (2006) 25: 475-83. [PMID:16996725]

Expression pattern clarity: one star
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4779Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4779_wholemount_moderate_3D_1.wlz
4779_wholemount_possible_3D_1.wlz
4779_wholemount_notDetected_3D_1.wlz
4779_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4779_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
future forebrain
detected detected
future hindbrain
detected detected
dorsal aorta
detected detected
branchial arch
detected detected
tail
detected detected
trunk somite
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Plod2 probeA
Entity Detected:Plod2, procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 ( MGI:1347007)
Notes:The Plod2 (LH2) probe template used in this study by Salo et al., 2006 [PMID:16996725] covered "nucleotides 565-1601" and was cloned into the SmaI site of pBluescript II SK (Stratagene). Editors note: the authors do no refer these co-ordinates to a particular sequence.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Salo AM; Sipila L; Sormunen R; Ruotsalainen H; Vainio S; Myllyla R, 2006 [PMID:16996725] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.matbio.2006.08.260] [ PMID:16996725] Salo AM, Sipil� L, Sormunen R, Ruotsalainen H, Vainio S, Myllyl� R 2006 The lysyl hydroxylase isoforms are widely expressed during mouse embryogenesis, but obtain tissue- and cell-specific patterns in the adult. Matrix Biol (25):475-83
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE