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EMAGE:4790

Prodh proline dehydrogenase ( MGI:97770)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4790
Figure 1A. [doi:10.1016/j.mcn.2006.09.001] Meechan DW; Maynard TM; Wu Y; Gopalakrishna D; Lieberman JA; Lamantia AS, "Gene dosage in the developing and adult brain in a mouse model of 22q11 deletion syndrome." Mol Cell Neurosci (2006) 33: 412-28. [PMID:17097888]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4790Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4790_wholemount_moderate.wlz
4790_wholemount_weak.wlz
4790_wholemount_possible.wlz
4790_wholemount_notDetected.wlz
4790_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4790_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
fronto-nasal process
detected detected
forebrain
detected detected
limb
detected detected
branchial arch
detected detected
heart
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Prodh probeA
Entity Detected:Prodh, proline dehydrogenase ( MGI:97770)
Sequence:sense strand is shown

>Prodh probeA
AGCCGCCTGACCCTGGAGATGCAGCGCAGGTTCAATGTGGATAAGCCGTTCATCTTCAACACATTCCAGT
GCTACCTCAAGGATGCCTATGACAATGTGACCTTGGATATGGAACTGGCTCGCCGTGAGGGCTGGTGTTC
CGGGGCCAAGCTGGTACGTCGTGCATACATGGCCCAAGAGCGTGTCAGGGCAGCAGAGATCGGTTATGAA
GACCCCATCAACCCTACATATGAAGCCACCAATGCTATGTACCACAGGTGCCTTAACTATGTTCTGGAGG
AGCTGAAGCACAGCACCAAGGCAGAAGTGATGGTGGCTTCCCACAACGAGGACACCGTGCACTTCACKTT
GTGCAGGATGAAGGAGATAGGCCTGCATCCTGCTGATGGTCAGGTGTGCTTCGGACAGCTGCTGGGGATG
TGTGACCAAATCAGCTTCCCACTAGGCCAGGCAGGCTTTCCTGTGTACAAGTATGTGCCCTATGGCCCTG
TGATGGAGGTACTCCCTTACCTGTCCCGCCGTGC
nt 1158 - nt 1681 of NM_011172.1
Notes:The Prodh (Prodh2) probe used in this study by Meechan et al., 2006 [PMID:17097888] correponds to nucleotides "1158-1681 of NM_011172". Editors Note: The authors are most probably referring to NM_011172.1 (2240bp) , as NM_011172.2 (2283bp) replaced NM_011172.1 on 02/12/06, only several days before publication of this study (15/12/06).
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:C57BL/6J
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Meechan DW; Maynard TM; Wu Y; Gopalakrishna D; Lieberman JA; Lamantia AS, 2006 [PMID:17097888] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.mcn.2006.09.001] [ PMID:17097888] Meechan DW, Maynard TM, Wu Y, Gopalakrishna D, Lieberman JA, LaMantia AS 2006 Gene dosage in the developing and adult brain in a mouse model of 22q11 deletion syndrome. Mol Cell Neurosci (33):412-28
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE