Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4796

Ptk7 PTK7 protein tyrosine kinase 7 ( MGI:1918711)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4796
Figure 6F. [doi:10.1016/j.gene.2003.12.006] Jung JW; Shin WS; Song J; Lee ST, "Cloning and characterization of the full-length mouse Ptk7 cDNA encoding a defective receptor protein tyrosine kinase." Gene (2004) 328: 75-84. [PMID:15019986]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4796Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4796_wholemount_moderate_3D_1.wlz
4796_wholemount_weak_3D_1.wlz
4796_wholemount_possible_3D_1.wlz
4796_wholemount_notDetected_3D_1.wlz
4796_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4796_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
forelimb bud
strong strong
trunk somite
detected detected
regionalExpression is stronger in the dorsal region.
tail somite
detected detected
regionalExpression is stronger in the dorsal region.
heart
detected detected
embryo
detected detected
regionalExpressed in head.
1st branchial arch
detected detected
Earlier expression domains are maintained i.e. prominent expression in the tail, somites, and first branchial arch.
tail
strong strong
Earlier expression domains are maintained i.e. prominent expression in the tail, somites, and first branchial arch.
gut
detected detected
nasal process
detected detected
Expression is detected in the cranio-facial region
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3039382
Entity Detected:Ptk7, PTK7 protein tyrosine kinase 7 ( MGI:1918711)
Sequence:sense strand is shown

>MGI:3039382
AGTGGTTCCGAGATGGGACCCCCCTCTCTGATGATCAGAGCACCCACACCGTCAGCAGCAGGGAGAGGAA
CCTGACCCTACGGCCAGCCAGTCCCGAACATAGTGGCCTCTACTCCTGCTGTGCCCACAATGCCTTTGGC
CAGGCCTGCAGCAGCCAGAACTTCACCTTGAGTGTTGCAGATGAAAGCTTTGCCAGGGTGGTGCTGGCAC
CTCAGGATGTTGTTGTAGCAAGGAACGAGGAGGCCATGTTCCATTGCCAGTTTTCAGCCCAGCCACCCCC
GAGCCTGCAGTGGGTCTTTGAGGACGAGACTCCCATCACTAACCGAAGCCGTCCCCCTCACCTCCGCAGA
GCTGTGGTGTTTGCCAATGGCTCTCTGCTGCTGACCCAAGTCCGGCCACGGAATGCAGGCGTCTACCGTT
GCATCGGTCAGGGACAGAGGGGCCCACCCATTGTCCTGGAAGCCACTCTCCACCTGGCAGAGATTGAAGA
CATGCTGCCGTTTGAACCACGGGTGTTCATAGCTGGTGATGAGGAACGAGTCACCTGCCCAGCCCCCCAG
GGCCTGCCTACACCCAGTGTCTGGTGGGAGCATGCTGGAGTCCCTCTTCCTGCCCATGGCAGGGTCCACC
AGAAGGGCCTTGAGCTTGTGTTTGTCACCATCGCTGAGAGTGATACTGGTGTCTACACCTGCCATGCAAG
CAACCTGGCTGGTCAGCGGCGACAGGATGTCAATATCACAGTGGCCACTGTACCCACATGGCTTAGGAAG
CCCCAAGACAGCCAGCTGGAAGAGGGCAAGCCTGGCTACTTGCACTGTCTGACACAGGCCACACCCAAGC
CCACTGTGATCTGGTACAGGAACCAGATGCTGATCTCAGAGGACTCGAGGTTCGAAGTTTCGAAGAATGG
GACCTTGCGCATCAATAGTGTGGAGGTGTATGACGGGACATTGTACCGTTGCGTGAGCAGTACCCCAGCC
GGCAGCATCGAGGCCCAGGCCCGAGTCCAGGTGCTGGAAAAACTCAAGTTCACGCCACCACCGCAGCCAC
AGCAGTGCATGGAGTTTGATAAGGAGGCTACGGTGCCCTGCTCAGCCACTGGCCGGGAGAAGCCCACGGT
TAAGTGGGTACGGGCAGATGGAAGTAGCCTCCCTGAATGGGTGACAGACAATGCTGGAACCCTACACTTT
GCCCGAGTGACCCGAGATGATGCTGGCAACTACACTTGCATTGCATCCAACGAGCCACAGGGCCAGATCC
GCGCTCATGTCCAGCTGACGGTGGCAGTTTTCATCACCTTCAAAGTGGAACCTGAGCGTACAACTGTGTA
CCAGGGCCACACAGCGCTGCTGCGGTGTGAGGCTCAGGGCGACCCCAAGCCTCTCATTCAGTGGAAAGGC
AAAGACCGGATCCTGGACCCTACCAAGCTGGGACCCAGGATGCACATC
nt 490 - nt 1937 of AF531873.1
Notes:The Ptk7 probe used in this study by Jung et al., 2004 [PMID:15019986] was a "1.4-kb fragment (nt 490-1937)". Editors note: The authors also state elsewhere that "By ligation of three overlapping cDNA fragments, pGEM-T-mPtk7 that contains the full-length mouse Ptk7 cDNA was obtained. Its cDNA sequence was submitted to the GenBank database under accession number AF531873", therefore it is assumed the nucleotide co-ordinates given refer to AF531873.1.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:MEMFA buffer (0.1 M MOPS, pH 7.5, 2 mM EGTA, 1 mM MgSO4, 3.7% formaldehyde)
General Information
Authors:Jung JW; Shin WS; Song J; Lee ST, 2004 [PMID:15019986] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.gene.2003.12.006] [ PMID:15019986] Jung JW, Shin WS, Song J, Lee ST 2004 Cloning and characterization of the full-length mouse Ptk7 cDNA encoding a defective receptor protein tyrosine kinase. Gene (328):75-84
Links:MGI:3039415 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI