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EMAGE:4833

Cdx2 caudal type homeobox 2 ( MGI:88361)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4833
Fig2C. from [doi:10.1002/jez.b.21154] J Exp Zoolog B Mol Dev Evol 308(3): 308-21, Wang WC; Shashikant CS, Evidence for positive and negative regulation of the mouse Cdx2 gene. Copyright 2008 [PMID:17358012]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4833Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4833_wholemount_moderate_3D_1.wlz
4833_wholemount_weak_3D_1.wlz
4833_wholemount_notDetected_3D_1.wlz
4833_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4833_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
tail neural tube
detected detected
regionalAt day 9.5 all tissues in the tailbud region are positive including neural tube and paraxial mesoderm. The anterior limit of expression is demarcated by the most recently formed somite.
tail paraxial mesenchyme
detected detected
At day 9.5 all tissues in the tailbud region are positive including neural tube and paraxial mesoderm. The anterior limit of expression is demarcated by the most recently formed somite.
tail
detected detected
homogeneousAt day 9.5 all tissues in the tailbud region are positive including neural tube and paraxial mesoderm. The anterior limit of expression is demarcated by the most recently formed somite.
hindgut
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Cdx2 probeB
Entity Detected:Cdx2, caudal type homeobox 2 ( MGI:88361)
Notes:The Cdx2 probe used in this study by Wang and Shashikant, 2007 [PMID:17358012] is described as follows: "Mouse Cdx2 antisense probe was made from a plasmid containing Cdx2 exon 1 (Chawengsakshophak et al., 1997 [PMID:9052785] ).
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Wang WC; Shashikant CS, 2007 [PMID:17358012] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1002/jez.b.21154] [ PMID:17358012] Wang WC, Shashikant CS 2007 Evidence for positive and negative regulation of the mouse Cdx2 gene. J Exp Zoolog B Mol Dev Evol (308):308-21
 [ doi:10.1038/386084a0] [ PMID:9052785] Chawengsaksophak K, James R, Hammond VE, Kontgen F, Beck F 1997 Homeosis and intestinal tumours in Cdx2 mutant mice. Nature (1997):84-7
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE