Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:4838

Cit citron ( MGI:105313)
TS19 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:4838
Fig1A. Copyright: Reprinted with permission from Cell Press from [doi:10.1016/S0896-6273(00)00090-8] Neuron 28(1): 115-27, Di Cunto F; Imarisio S; Hirsch E; Broccoli V; Bulfone A; Migheli A; Atzori C; Turco E; Triolo R; Dotto GP; Silengo L; Altruda F, Defective neurogenesis in citron kinase knockout mice by altered cytokinesis and massive apoptosis. Copyright 2000. [PMID:11086988]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4838Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4838_wholemount_moderate_3D_1.wlz
4838_wholemount_weak_3D_1.wlz
4838_wholemount_possible_3D_1.wlz
4838_wholemount_notDetected_3D_1.wlz
4838_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4838_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
central nervous system
strong strong
The highest expression levels were observed in the developing CNS, (with a noticeable spatial restriction to the proliferating areas of the entire neural tube).
limb
strong strong
retina
strong strong
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Cit probeK
Entity Detected:Cit, citron ( MGI:105313)
Sequence:sense strand is shown

>Cit probeK
CCCGGGAAGGGATGCTAGACGCCCTCTTCGCTCTCTTTGAAGAGTGCAGCCAACCCGCCCTGATGAAGAT
GAAGCACGTGAGCAGCTTTGTCCAGAAGTATTCCGACACCATAGCCGAGTTGCGGGAGCTGCAGCCGTCG
GCGAGAGACTTCGAAGTTCGAAGCCTTGTGGGCTGTGGTCACTTCGCTGAAGTGCAGGTGGTTAGAGAGA
AGGCGACCGGGGACGTCTATGCCATGAAAATCATGAAGAAGAAGGCTTTGCTGGCCCAGGAACAGGTTTC
ATTTTTCGAGGAGGAGAGGAACATATTATCTCGGAGCACGAGTCCTTGGATCCCCCAGTTACAGTACGCC
TTTCAGGACAAAAATAACCTTTACCTGGTCATGGAATATCAGCCTGGAGGGGATTTCCTGTCGCTTCTGA
ACAGATACGAGGACCAATTAGATGAGAGCATGATCCAGTTTTACCTTGCTGAGCTGATTTTGGCTGTCCA
CAGCGTGCACCAGATGGGATATGTGCATCGAGACATCAAGCCCGAGAACATCCTCATCGACCGGACGGGA
GAGATCAAGCTGGTGGATTTTGGATCAGCCGCTAAGATGAATTCAAATAAGGTGGATGCCAAACTCCCCA
TTGGGACCCCGGATTACATGGCTCCGGAAGTGTTGACCGTGATGAACGAGGACCGAAGGGGCACATACGG
CTTGGACTGTGACTGGTGGTCTGTCGGAGTTGTTGCTTATGAGATGGTTTATGGGAAGACCCCATTCACA
GAGGGAACCTCCGCCCGGACCTTCAACAACATCATGAACTTCCAGCGGTTTTTGAAGTTCCCAGATGACC
CCAAAGTTAGCAGTGAGCTCCTTGATCTGCTTCAGAGTCTGCTGTGTGTCCAGAAAGAGAGACTGAAGTT
CGAGGGTCTCTGCTGCCACCCTTTCTTTGCCAGAACGGACTGGAACAACATCCGTAACTCTCCTCCCCCC
TTCGTCCCCACCCTCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGCTT
TCATCCTCTGTGTGCCAGCTGAGCCCCTCGCGTTCTCAGGCGAAGAGCTGCCGTTTGTGGGATTTTCGTA
CAGCAAGGCACTGGGGTATCTTGGTA
nt 911 - nt 2056 of AF086824.1
Notes:The Cit (Citron-K/Crik) probe used in this study by Di Cunto et al., 2000 [PMID:11086988] is described as "probe K", which was "transcribed from a plasmid containing a fragment of Citron-K (Di Cunto et al., 1998 [PMID:9792683] ) (nucleotides 911-2056 for probe K)." Editors Note: AF086824.1 is the sequence referred to in Di Cunto et al., 1998.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:11.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Di Cunto F; Imarisio S; Hirsch E; Broccoli V; Bulfone A; Migheli A; Atzori C; Turco E; Triolo R; Dotto GP; Silengo L; Altruda F, 2000 [PMID:11086988] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0896-6273(00)00090-8] [ PMID:11086988] Di Cunto F, Imarisio S, Hirsch E, Broccoli V, Bulfone A, Migheli A, Atzori C, Turco E, Triolo R, Dotto GP, Silengo L, Altruda F 2000 Defective neurogenesis in citron kinase knockout mice by altered cytokinesis and massive apoptosis. Neuron (28):115-27
 [ doi:10.1074/jbc.273.45.29706] [ PMID:9792683] Di Cunto F, Calautti E, Hsiao J, Ong L, Topley G, Turco E, Dotto GP 1998 Citron rho-interacting kinase, a novel tissue-specific ser/thr kinase encompassing the Rho-Rac-binding protein Citron. J Biol Chem (273):29706-11
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE