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EMAGE:484

Shh sonic hedgehog ( MGI:98297)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:484
Fig5A and B, Chang et al, 1994 [PMID:7720571] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Image annotations: cnt, caudal neural tube; fb, forebrain; fp, floor plate; hb, hindbrain; mb, midbrain; mf, mesencephalic flexure; nc, notochord; tb, tracheal branch point.
Expression Pattern Description
Spatial Annotation:
EMAGE:484EMAGE:484Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
484_voxel_strong_3D_1.wlz
484_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:484_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
notochord
strong strong
homogeneous
diencephalon
strong strong
regionalPresent in the ventral region
neural tube
strong strong
regionalPresent in most of the ventral neural tube
carina trachea
strong strong
Annotation Validation: Submitter + EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2148101
Entity Detected:Shh, sonic hedgehog ( MGI:98297)
Notes:The Shh probe used in this study by Chang et al, 1994 [PMID:7720571] is defined as "a 249 bp BamHI/SmaI fragment", "that extends from residues 297 to 380 within the Hhg-1 open reading frame (see Fig. 1 therein) ". Editor's note: This information is ambiguous i.e. Restriction cutting of Shh cDNA sequences with BamHI and SmaI identify only one fragment in the region of 249bp (e.g. a 251nt fragment from nt930-1180 in NM_009170.2), however this does not correspond to a region between amino acid residues 297-380 (in the example here, this fragment would extend from aa201-aa284). Therefore it is unclear which region is covered by the probe.
Chemistry:RNA
Strand:antisense
Label:P33
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:section
Procedures
Staining procedure:autoradiography
General Information
Authors:Chang et al, 1994 [PMID:7720571] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:7720571] Chang DT, Lopez A, von Kessler DP, Chiang C, Simandl BK, Zhao R, Seldin MF, Fallon JF, Beachy PA 1994 Products, genetic linkage and limb patterning activity of a murine hedgehog gene. Development (120):3339-53
Links:MGI:2137954 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI