EMAGE mouse gene expression spatial database

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EMAGE:4924

Rnf111 ring finger 111 ( MGI:1934919)
TS14 (9.5 dpc)
in situ hybridisation

Data Images


Fig3F [doi:10.1038/35071095] Episkopou V; Arkell R; Timmons PM; Walsh JJ; Andrew RL; Swan D, "Induction of the mammalian node requires Arkadia function in the extraembryonic lineages." Nature 2001 Apr 12;410(6830):825-30. © Nature Publishing Group. Reproduced with permission from Nature.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4924_wholemount__moderate.wlz

4924_wholemount__strong.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4924_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

detected

homogeneous

Arkadia expression is present in all tissues examined

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Rnf111 probeA
Entity Detected:	Rnf111, ring finger 111 ( MGI:1934919)
Sequence:	sense strand is shown >Rnf111 probeA GAATTCTCTCATCTGTGTGATGATTCTCAAAAACAAGAGAAGGACATGACTGGCAACCAGCAAGAACAAG AAAAAAGTGGTGTTGTGAGAAAAAAGCGCAAAAGCCAGCAGGCTGGCCCCTCATATGTGCAGAACTGTGT CAAAGAAAATCAGGAAATCCTAGGGCGCAGACAACAGCTAGAGACACCGAGTGATGAGGATAATGACTCT TCCTTAAGTGAGTGTCTGTCTTCTCCCTCATCTAGTCTCCATTTTGGGGGCTCTGATACAGTGACTTCAG ATGAGGATAAAGAAGTCTCGGTGAGACATACCCAGCCTGTTCTGAGTGCTAAAAGTAGAAGTCACAGTGC AAGGTCTCACAAGTGGCCTCGAACTGAGGCAGATCCTGTGCCAAGTTTGTTAATGAAAAGACCTTGTTTT CATGGCAGTGCACTAAGGAGAGTCACATGCAGAAAGAGGCTGGTGAAGAGCAGCTCCTCGCAGAGGACAC AGAAGCAGAAGGAGAGGATGCTAGTGCAGAGGAAGAAGCGGGAGGCGCTAGCTCAGAGGAAGTATGCTCT TCTCTCCAGCTCCAGTAGCTCCAGTGAGAATGACCTCAGCAGCGATTCCTCGTCCAGCTCCTCCACCGAT GGAGAAGAGGACCTGTGTGCATCTGCCAGTGAGAACCCCAGCAACCCCGCTGCTCCCTCAGGAAGTATTG ATGAAGATGTTGTGGTGATAGAAGCCTCCTTCACTCCCCAGGTCACTGCCAATGAAGAAATTAATGTTAC CTCAACTGACAGTGAAGTGGAGATTGTTACAGTTGGAGAAAGCTATCGGTCTCGTTCAACCCTTGGACAC TCCAGATCTCATTGGAGCCAAGGTTCAAGTTCGCATACAGGACGGCCACAGGAGTCTCGAAACCGCAGTA GGATCTCTACTGTTATACAGCCCCTGAGGCAGAATGCAGCAGAAGTTGTGGACCTTACTGTTGATGAAGA TGAACCTACTATAGTACCAACCACTTCTGCTAGAATGGACTCACAAACTACTAGTGCTTCCATTAACAAT TCAAATCCATCTACCTCTGAGCAAGCCTCTGATACTACTTCAACTGTGGCCAGTAGCCAGCCTTCCACAG TGTCAGAGACTGAAGCTACTCTTACAAGCAATAGTGCAACTGGTTCTTCTGTGGGCGATGACGTGAGGAG AACTGCATCTAGTGCTGTCCCAGAAAGTGGTCCTCCTGCAATGCCAAGGCTACCTTCTTGCTGCCCCCAG CACTCACCATGTGGAGGGACATCACAGAGCCATCATGCATTAGCACACCCACACTCAAGTTGTTTTCAGC AGCATGGCCACCATTTTCAGCATCACCACCATCACCACCATACTCCCCACCCAGCTGTCCCAGTTTCTCC TTCCTTCAGTGACCCTGCTTGCCCAGTGGAAAGACCTCAAGTACAGGCGCCTTGTGGAGCAAATAGCAGC TCTGGTTCCAGCTACCATGACCAGCAGGCATTGCCAGTCGATCTGAGCAACAGTGCTCTCAGGACTCATG GAAGTGGGGGTTTCCATGGTGCATCTGCTTTTGACCCCTGCTGCCCTGTCACATCTTCCCGGGCTGCAGT CTTTGGCCATCAGGCTGCTGCTGCCCCGACTCAGCCATTATCAATAGATGGCTATGGCTCCAGCATGGTT GCCCAGCCCCAGCCCCAGCCCCCTCCACAGCCTTCTCTTTCGTCATGTCGGCACTACATGCCACCTCCGT ATGCTTCCTTGACAAGACCACTGCACCATCAAGCCTCAGCTTGCCATCACTCTCATGGAAATGCCCCTCC CCAGACTCAGCCTCCCCCTCAAGTGGATTACGTGATTCCGCATCCTGTCCATGCTTTCCATTCTCAGATA TCTTCTCATGCAGCATCTCACCCTGTGGCACCACCGCCGCCAACACATTTAGGCAGTACAGCGGCACCCA TCCCTCAGCATCTTCCTCCTGCTCACCAGCCAATTTCACACCATATTCCAGCCCCAGCACCTTCAGCCCA GAGACTGCACCCTCATGAAGTGATGCAGAGGATGGAAGTTCAGAGGAGGAGGATGATGCAGCATCCAACG CGGGC
	nt 529 - nt 2633 of AF330197.1
Notes:	The Rnf111 (Arkadia) probe used in this study by Episkopou et al., 2001 [PMID:11298452] "contained nucleotides 529-2,633; GenBank accession no. AF330197".
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	9.5 dpc
Theiler Stage:	TS14
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Episkopou V; Arkell R; Timmons PM; Walsh JJ; Andrew RL; Swan D, 2001 [PMID:11298452] . Indexed and spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1038/35071095] [ PMID:11298452] Episkopou V, Arkell R, Timmons PM, Walsh JJ, Andrew RL, Swan D 2001 Induction of the mammalian node requires Arkadia function in the extraembryonic lineages. Nature (410):825-30
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source