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EMAGE:4940

Rybp RING1 and YY1 binding protein ( MGI:1929059)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4940 EMAGE:4940
Fig3B. [doi:10.1093/emboj/18.12.3404] Garcia E; Marcos-Gutierrez C; del Mar Lorente M; Moreno JC; Vidal M. EMBO J 1999 Jun 15;18(12):3404-18. "RYBP, a new repressor protein that interacts with components of the mammalian Polycomb complex, and with the transcription factor YY1." [PMID:10369680] © Nature Publishing Group. Reproduced with permission from EMBO J. Fig3C. [doi:10.1093/emboj/18.12.3404] Garcia E; Marcos-Gutierrez C; del Mar Lorente M; Moreno JC; Vidal M. EMBO J 1999 Jun 15;18(12):3404-18. "RYBP, a new repressor protein that interacts with components of the mammalian Polycomb complex, and with the transcription factor YY1." [PMID:10369680] © Nature Publishing Group. Reproduced with permission from EMBO J.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
(B) RYBP is ubiquitously expressed with the main exception of the heart (h). Higher mRNA levels are detected in the hindbrain region (hb), the first branchial arch (ba) and forelimb bud (lb). (C) Flat-mount preparation of the hindbrain region of a E9.5 mouse embryo hybridized with a RYBP cRNA probe. RYBP expression is restricted to the boundaries between rhombomeres (r1-r6) and the dorsal aspect of the hindbrain (hb).
Expression Pattern Description
Spatial Annotation:
EMAGE:4940Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4940_wholemount__moderate.wlz
4940_wholemount__weak.wlz
4940_wholemount__notDetected.wlz
4940_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4940_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
future hindbrain
strong strong
regionalRYBP expression is restricted to the boundaries between rhombomeres (r1-r6) and the dorsal aspect of the hindbrain.
1st branchial arch
strong strong
forelimb bud
strong strong
embryo
detected detected
Ubiquitously expressed except in heart.
heart
not detected not detected
homogeneous
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Rybp probeA
Entity Detected:Rybp, RING1 and YY1 binding protein ( MGI:1929059)
Sequence:sense strand is shown

>Rybp probeA
TCGACGGAGCTCGAGCCCAGCAGCGGAGGGCGGGCGGGCGGCGCGGGAGGGCGGGGGCCGCTCCGCGACG
CTGCGGACCGCGCTTCTCCTCTGAGCGGCGGCGCGCGCAGCTGTGGGGCGCCGGGGGCCAGCCCGTCCAT
GACCATGGGCGACAAGAAGAGCCCGACCAGGCCAAAAAGACAAGCGAAACCTGCCGCAGACGAAGGCTTT
TGGGATTGTAGCGTCTGCACCTTTAGGAACAGCGCCGAAGCCTTTAAATGCAGCATCTGCGATGTGCGGA
AAGGCACCTCCACCAGGAAACCTCGCATCAATTCTCAGCTGGTGGCACAGCAGGTGGCACAGCAGTATGC
CACTCCACCTCCCCCTAAGAAAGAGAAGAAGGAGAAGGTCGAAAAGCCTGACAAAGAAAAGCCAGAGAAA
GACAAGGACATTAGCCCCAGTGTCACCAAGAAAAACACCAACAAGAAAACAAAACCAAAGTCTGATATTC
TGAAAGATCCTCCTAGTGAAGCTAACAGCATACAGTCTGCTAACGCTACAACAAAGACCAGCGAAACAAA
CCACTCCTCAAGGCCCCGGCTGAAGAATGTGGACAGGAGCACCGCACAGCAGTTGGCAGTAACTGTGGGC
AACGTCACCGTCATTATCACAGACTTTAAGGAAAAGACTCGCTCCTCCTCCACATCCTCTTCCACAGTGA
CCTCCAGTGCAGGGTCAGAACAGCAGAACCAGAGCAGCTCGGGCTCAGAGAGCACAGACAAAGGCTCCTC
CCGCTCCTCCACGCCAAAGGGCGACATGTCAGCAGTGAATGATGAATCTTTCTGAGATTGCACATGGAAT
TGTGAAACTATGAATCAGGGTATGAGATTCAAACCCTCCAGG
nt 1 - nt 882 of AF101779.1
Notes:The Rybp probe used in this study by Garcia et al., 1999 [PMID:10369680] was "obtained from a pBluescript plasmid (Stratagene) containing full-length RYBP cDNA". Editors note: the sequence AF101779.1 contains the ORF plus some 5' and 3' UTR sequence and was submitted to GenBank by Garcia & Vidal in conjunction with this publication.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Garcia E; Marcos-Gutierrez C; del Mar Lorente M; Moreno JC; Vidal M, 1999 [PMID:10369680] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1093/emboj/18.12.3404] [ PMID:10369680] Garc�a E, Marcos-Guti�rrez C, del Mar Lorente M, Moreno JC, Vidal M 1999 RYBP, a new repressor protein that interacts with components of the mammalian Polycomb complex, and with the transcription factor YY1. EMBO J (18):3404-18
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE