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EMAGE:5007

Dnd1 dead end homolog 1 (zebrafish) ( MGI:2447763)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:5007
FigSupp3c [doi:10.1038/nature03595] Nature 2005 435(7040): 360-4, Youngren KK; Coveney D; Peng X; Bhattacharya C; Schmidt LS; Nickerson ML; Lamb BT; Deng JM; Behringer RR; Capel B; Rubin EM; Nadeau JH; Matin A, The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumours. 2008 [PMID:15902260] © Nature Publishing Group. Reproduced with permission from Nature.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotation: b - first branchial arch
Expression Pattern Description
Spatial Annotation:
EMAGE:5007Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5007_wholemount__moderate.wlz
5007_wholemount__weak.wlz
5007_wholemount__possible.wlz
5007_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5007_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
neural tube
detected detected
head mesenchyme
detected detected
1st branchial arch
detected detected
hindgut
detected detected
Expression is detected in the hindgut, through which primordial germ cells are migrating at this stage.
embryo
detected detected
Expression is 'widespread'
tail
detected detected
regionalExpression was detected in the caudal aspect of the tail.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1390057
Entity Detected:Dnd1, dead end homolog 1 (zebrafish) ( MGI:2447763)
Sequence:sense strand is shown

>MGI:1390057
AGCCGAAAGAAGGTCTAAAGAGGGAACTGTAAGACTTTGGAAAGAGCTATGCAGTCCAAACGGGAGTGCG
AGCAATGGTGTGAGAGGGTGAATCCAGAGAACAAGGCAGCCCTGGAGGCGTGGGTAAGGGAGACTGGCAT
CCGCCTGGTGCAGGTCAACGGGCAAAGGAAGTATGGAGGGCCACCCCCAGGTACAGTAGCCCCAGCCCCT
GTGACACTAGGCCATCCTCGGCCACTCTTTATAGATAGGATCCAAAGTCAGAAAACCCAAATTACCTGAC
GTACTCTCTACTAGATGTGGCTATTTGTCTGGCCTCCCTTCCACACTGGCCTTCAAGGATGGTGCCAGCC
TAGTTGTTTATAGTCTAGTCCAATTATGGTAACGACCCCCAGGAGCCAGAAAGGTATCAATATTTCCAGA
TGGTCTCCCTCCCATCCCCACCCCTACCCCCCCCCCCCAGCTTTATCCTGGAGCTTAAAAACATCCTTGT
GGACCACAGTAACCAACAAAATCCTTTCCCTCCAGGCTGGGTGGGCAGCCCGCCACCGTCAGGGTCCGAG
GTGTATATCGGACGACTTCCGCAGGACGTGTACGAGCACCAGCTAATCCCACTCTTCCAGCGCGTGGGGC
GCCTCTATGAGTTCCGCCTAATGATGACCTTCAGTGGTTTGAACCGCGGCTTTGCCTATGCGCGCTACAG
CTCGCGGCGCGGTGCCCAGGCCGCCATTGCTACGCTGCACAACCACCAGCTGCGGCCTTCTTGCCAGCTC
CTGGTGTGCCGAAGCACCGAGAAGTGCGAGCTGACGGTGGACGGGCTGCCTCTTAGCTTAAACCGCCGAG
CGTTACTGCTCGCCCTGCAACCGTTCGGTCCCTGCCTCCAGGAGACACTGCTGCTACCCAGCCCTGGGTC
TGCGCCCTCTCAGATTGCGCTGCTCAAGTTCAGTACGCACCGAGCTGCTGCTATGGCCAAAAAGGCCCTG
GTAGAAGGTCAGTCACGCCTCTGTGGAGAGCAGGTGGCTGTGGAGTGGCTCAAGCCAGACCTAAAGCAGC
ACTTCCGCCAGCAGCTTGCAGGTCCCTCACTGCGGTTCCTCAGGCCAGATGTCAGCCAACTAACCCAGAC
CAGGGAGAAGCTGGGGTCCCAAGGGGCTCGGGCTGCCCTGCAACTGCTGTGTCAACGGATGAAGCTAGGC
AGCCCAGTGTTCCTGACCAAGTGTTTAGGAACAGGGCCTGCTGGCTGGCATCGCTTTTGGTACCAGGTGG
TGATCCCTGGGCATCCAGTGCCTTTCAGTGGCCTCATTTGGGTTGTGTTGGCCTCTGATTGGCAGGATGG
GCATGAGGTGGCCAAGGATGCTGTGTCCGCACAGCTGCTGGAGGCACTGAGTGAACCTAGGACCAGCTTG
TGGTCTCCTGGGGCTGAAGCAGGTACTATGGTTAAGCAGTGACCCCTTCTTTTTACAGGTACCCTAAATG
GGTTAAGCAGAGCCTGTGCCAACCCCCCAGCCCAGCAGGCCTGGGCAGCCCAGGGCCTGGTGACAGCTTT
CCCTGCTGGGACAGGGCCCTGTTGCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACT
GAGCCCAGGGTCTGACCTGCTATCCTTAGTCAATTCCCAGCTTGGCACCAGAGCTTACTATGAATCTTTG
TTTTTATTTGGAGAACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACA
TGGTTTTTGTTTTTCTATACTGGTTTTATTTATATTAAAACCCCAGTTGGTATAAAAAAAAAAAAAAAAA
AAAAA
nt 1 - nt 1825 of BC034897.1
Notes:The Dnd1 probe used in this study by Youngren et al., 2005 [PMID:15902260] is described as "Full-length cDNA of Dnd1 (image clone ID: 3470697)."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Youngren KK; Coveney D; Peng X; Bhattacharya C; Schmidt LS; Nickerson ML; Lamb BT; Deng JM; Behringer RR; Capel B; Rubin EM; Nadeau JH; Matin A, 2005 [PMID:15902260] , Indexed by GXD, Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1038/nature03595] [ PMID:15902260] Youngren KK, Coveney D, Peng X, Bhattacharya C, Schmidt LS, Nickerson ML, Lamb BT, Deng JM, Behringer RR, Capel B, Rubin EM, Nadeau JH, Matin A 2005 The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumours. Nature (435):360-4
Links:MGI:3582204 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI