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EMAGE:5030

Sema3e sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E ( MGI:1340034)
TS19 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:5030
Figure 1A. [doi:10.1126/science.1105416] Gu C; Yoshida Y; Livet J; Reimert DV; Mann F; Merte J; Henderson CE; Jessell TM; Kolodkin AL; Ginty DD, "Semaphorin 3E and plexin-D1 control vascular pattern independently of neuropilins." Science 2005 Jan 14;307(5707):265-8. [PMID:15550623]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: White arrowhead, region of sema3E mRNA expression.
Expression Pattern Description
Spatial Annotation:
EMAGE:5030Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5030_wholemount_moderate.wlz
5030_wholemount_possible.wlz
5030_wholemount_notDetected.wlz
5030_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5030_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
trunk somite
strong strong
regionalHighest levels found in the caudal region of each somite.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Sema3e probeA
Entity Detected:Sema3e, sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E ( MGI:1340034)
Notes:The Sema3e probe used in this study by Gu et al., 2005 [PMID:15550623] is of unreported sequence.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:11.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Gu C; Yoshida Y; Livet J; Reimert DV; Mann F; Merte J; Henderson CE; Jessell TM; Kolodkin AL; Ginty DD, 2005 [PMID:15550623] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1126/science.1105416] [ PMID:15550623] Gu C, Yoshida Y, Livet J, Reimert DV, Mann F, Merte J, Henderson CE, Jessell TM, Kolodkin AL, Ginty DD 2005 Semaphorin 3E and plexin-D1 control vascular pattern independently of neuropilins. Science (307):265-8
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE