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EMAGE:5051

Slc32a1 solute carrier family 32 (GABA vesicular transporter), member 1 ( MGI:1194488)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5051
Figure 4D. [doi:10.1016/j.gene.2005.01.009] Oh WJ; Noggle SA; Maddox DM; Condie BG, "The mouse vesicular inhibitory amino acid transporter gene: Expression during embryogenesis, analysis of its core promoter in neural stem cells and a reconsideration of its alternate splicing." Gene 2005 May 23;351():39-49. [PMID:15826867]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5051Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5051_wholemount_moderate_3D_1.wlz
5051_wholemount_weak_3D_1.wlz
5051_wholemount_notDetected_3D_1.wlz
5051_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5051_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
telencephalon
detected detected
regionalExpression is present in the basal telencephalon.
hindbrain
weak weak
future spinal cord
weak weak
regionalExpression is present in bilateral stripes (on either side of the midline).
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3581228
Entity Detected:Slc32a1, solute carrier family 32 (GABA vesicular transporter), member 1 ( MGI:1194488)
Sequence:sense strand is shown

>MGI:3581228
AATTCCACTGCATGATGAACTGGACACACATCGCCGCCTGCGTGCTCAAGGGTCTCTTCGCGCTCGTCGC
CTACCTCACCTGGGCCGACGAGACCAAGGAAGTCATCACGGATAACCTGCCCGGCTCCATCCGCGCCGTG
GTCAACCTCTTCCTGGTGGCCAAGGCGCTGCTGTCCTATCCGTTGCCCTTCTTCGCGGCCGTCGAAGTGC
TGGAGAAGTCTCTCTTCCAGGAAGGCAGTCGCGCCTTCTTCCCCGCCTGCTATGGAGGCGACGGTCGCCT
TAAGTCCTGGGAGCTGACGCTGCGCTGCGCGCTGGTGGTCTTCACGCTGCTCATGGCCATCTACGTGCCA
CACTTCGCGCTGCTCATGGGCCTCACGGGCAGCCTCACAGGCGCCGGCCTCTGCTTCCTGCTGCCCAGCC
TCTTCCACTTGCGCCTTCTCTGGCGCAAGCTGCTGTGGCACCAGGTCTTCTTCGATGTGGCCATCTTCGT
CATCGGCGGCATCTGCAGCGTGTCCGGCTTCGTGCATTCAC
nt 1045 - nt 1575 of AJ001598.1
Notes:The Slc32a1 (Viaat) probe used in this study by Oh et al., 2005 [PMID:15826867] "was made from a 530 bp fragment corresponding to nucleotides 1045-1575 of a mouse EST clone (Genbank accession AJ001598)".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:Swiss Webster
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Oh WJ; Noggle SA; Maddox DM; Condie BG, 2005 [PMID:15826867] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.gene.2005.01.009] [ PMID:15826867] Oh WJ, Noggle SA, Maddox DM, Condie BG 2005 The mouse vesicular inhibitory amino acid transporter gene: expression during embryogenesis, analysis of its core promoter in neural stem cells and a reconsideration of its alternate splicing. Gene (351):39-49
Links:MGI:3581311 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI