Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:5053

Slit1 slit homolog 1 (Drosophila) ( MGI:1315203)
TS18 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5053 EMAGE:5053
Figure 5A. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.1999.9371] Dev Biol 212: 290-306, Yuan W; Zhou L; Chen JH; Wu JY; Rao Y; Ornitz DM, "The mouse SLIT family: secreted ligands for ROBO expressed in patterns that suggest a role in morphogenesis and axon guidance." Copyright 1999 [PMID:10433822] Figure 5B. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.1999.9371] Dev Biol 212: 290-306, Yuan W; Zhou L; Chen JH; Wu JY; Rao Y; Ornitz DM, "The mouse SLIT family: secreted ligands for ROBO expressed in patterns that suggest a role in morphogenesis and axon guidance." Copyright 1999 [PMID:10433822]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: second (II) branchial arch; limb bud (lb); maxillary component (ma); mandibular component (mb); rhombic lip (rl); roof plate (rp); tectum (tc).
Expression Pattern Description
Spatial Annotation:
EMAGE:5053Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5053_wholemount_moderate.wlz
5053_wholemount_weak.wlz
5053_wholemount_notDetected.wlz
5053_wholemount_strong.wlz
5053_wholemount_possible.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5053_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
midbrain
strong strong
regionalExpressed in the midline of the developing tectum.
neural tube roof plate
detected detected
brain
detected detected
regionalExpressed in roofplate.
trunk somite
detected detected
regionalExpressed in a segmented pattern in the posterior dermamyotomes.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Slit1 probeA
Entity Detected:Slit1, slit homolog 1 (Drosophila) ( MGI:1315203)
Sequence:sense strand is shown

>Slit1 probeA
TCACTCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGAC
CTTCCGGCTGCACTCCAACCACCTGTTCTGTGACTGTCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAG
AGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGG
TGCAAAAGGGCGAATTCAGCTGCTCAGGCCAGGGGGAGGCTGCGGGAGCACCTGCCTGTACCCTCTCGTC
CGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACCGCC
ATCCCTGCTAACCTTCCAGAGACCATGACAGAGATCCGCCTGGAGTTGAACGGTATCAAATCCATCCCAC
CCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATAGACCTGAGCAACAACCAGATTGCAGAGATTGC
ACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCTGGTCCTCTATGGCAACAAGATTACAGACCTG
CCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCTGCTTCTAAATGCCAACAAGATCAACTGCA
TCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAG
TCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACTGCATCTGGCCCAGAATCCTTTCATC
TGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGAT
GTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGC
CAAAGAGCAGTACTTCATTCCAGGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCC
TGCCCCCACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTG
AGCGAATCCCCCAGTCCACGACTGAGCTACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGG
GTTGTTTAAGAAGCTCTCACATCTGAAGAAAATAAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGAC
GGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAA
GTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCTGATGCTGAGGAACAACCGTATCAGCTGTATCCA
CAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATC
TCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTAAACCTCCTGGCCAACCCGTTCAACTGCA
ACTGCC
nt 1007 - nt 2482 of NM_015748.1
Notes:The Slit1 probe used in this study by Yuan et al., 1999 [PMID:10433822] was a "1476-bp PCR fragment corresponding to position 556 to 2031 bp of the coding region". Editors Note: the coding region of NM_015748.1 starts at nt 451 therefore the probe extends between nt 1007-2482 of this sequence.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:Swiss Webster
Age:10.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Yuan W; Zhou L; Chen JH; Wu JY; Rao Y; Ornitz DM, 1999 [PMID:10433822] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1006/dbio.1999.9371] [ PMID:10433822] Yuan W, Zhou L, Chen JH, Wu JY, Rao Y, Ornitz DM 1999 The mouse SLIT family: secreted ligands for ROBO expressed in patterns that suggest a role in morphogenesis and axon guidance. Dev Biol (212):290-306
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE