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EMAGE:5055

Slit3 slit homolog 3 (Drosophila) ( MGI:1315202)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5055
Figure 5I. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.1999.9371] Dev Biol 212: 290-306, Yuan W; Zhou L; Chen JH; Wu JY; Rao Y; Ornitz DM, "The mouse SLIT family: secreted ligands for ROBO expressed in patterns that suggest a role in morphogenesis and axon guidance." Copyright 1999 [PMID:10433822]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: second (II) branchial arch; lateral ridge tissue (lr); limb bud (lb); maxillary component (ma); mandibular component (mb); nasal pit (np); otic vesicle (ov).
Expression Pattern Description
Spatial Annotation:
EMAGE:5055Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5055_wholemount_moderate_3D_1.wlz
5055_wholemount_notDetected_3D_1.wlz
5055_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5055_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
forelimb bud mesenchyme
detected detected
regionalExpressed distally.
hindlimb bud mesenchyme
detected detected
regionalExpressed distally.
embryo
detected detected
regionalExpressed in lateral ridge tissue flanking limb buds.
otocyst
strong strong
1st branchial groove
detected detected
2nd branchial groove
detected detected
3rd branchial groove
detected detected
4th branchial groove
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Slit3 probeA
Entity Detected:Slit3, slit homolog 3 (Drosophila) ( MGI:1315202)
Sequence:sense strand is shown

>Slit3 probeA
CCAGATGCAGCAGCCCCGAGTCCATGGCAGACAGACTCCTGCTCACCACCCCCACTCACCGGTTCCAGTG
CAAAGGGCCAGTGGACATTAACATCGTGGCCAAGTGCAACGCCTGCCTCTCTAGCCCGTGCAAGAACAAC
GGCACTTGCAGTCAGGATCCCGTGGAGCAGTACCGCTGCACCTGCCCCTACAGCTACAAGGGCAAGGACT
GCACCGTACCCATCAACACCTGCGTCCAGAACCCCTGTGAGCACGGAGGCACCTGCCACCTCAGTGAGAA
CCTCAGAGATGGATTCAGCTGCTCCTGCCCTCTGGGCTTTGAGGGACAGCGATGTGAGATCAACCCAGAT
GACTGTGAGTATAACGACTGTGAAAACAGTGCCACCTGTGTGGATGGGATCAACAACTACGCATGCCTGT
GCCCGCCGAACTACACAGGGGAGCTGTGTGATGAGGTGATTGACTACTGTGTGCCCGAGATGAACCTCTG
TCAGCACGAGGCCAAGTGCATCTCCCTGGACAAAGGATTCAGGTGCGAATGTGTCCCTGGCTACAGTGGA
AAGCTGTGTGAGACAAACAACGATGACTGTGTGGCTCACAAGTGTCGCCATGGAGCCCAGTGTGTGGACG
AGGTCAATGGCTACACATGCATCTGCCCCCAGGGCTTCAGTGGGCTCTTCTGTGAGCATCCCCCACCCAT
GGTTCTGCTACAAACCAGCCCCTGCGACCAGTACGAGTGCCAGAATGGGGCGCAGTGCATTGTGGTACAG
CAGGAGCCCACTTGCCGCTGTCCCCCAGGCTTTGCTGGACCCAGGTGTGAGAAGCTCATCACTGTGAACT
TCGTGGGCAAGGACTCTTATGTGGAACTGGCCTCCGCCAAGGTCCGGCCCCAGGCCAACATCTCCCTGCA
GGTGGCGACTGACAAGGACAATGGCATCCTTCTTTACAAGGGAGACAATGACCCCTTGGCACTGGAGCTG
TACCAGGGCCACGTGAGGCTGGTGTATGACAGCCTGAGCTCCCCTCCAACCACGGTGTACAGTGTGGAGA
CGGTGAATGATGGCCAGTTTCACAGTGTGGAGCTGGTGATGCTAAACCAGACCCTGAACCTGGTGGTAGA
CAAAGGAGCTCCCAAGAGCCTGGGGAAGCTGCAGAAGCAACCAGCAGTGGGCAGCAACAGCCCCCTCTAC
CTTGGAGGCATCCCCACCTCTACGGGCCTCTCAGCCTTACGCCAGGGTGCAGACAGGCCGCTGGGCGGCT
TCCACGGCTGCATCCACGAGGTGCGCATCAACAACGAGTTGCAGGATTTCAAGGCCCTCCCCCCACAGTC
CCTGGGGGTCTCTCCTGGCTGCAAATCCTGCACTGTGTGTCGTCATGGCCTGTGTCGCTCCGTGGAGAAG
GACAGCGTAGTGTGTGAGTGCCACCCGGGATGGACCGGTCCGCTATGTGATCAGGAAGCTCGGGACCCCT
GCCTTGGTCACAGCTGCAGGCACGGGACATGCATGGCGACTGGGGACTCCTACGTGTGCAAGTGTGCCGA
GGGCTACGGAGGGGCTTTGTGTGACCAGAAGAATGACTCTGCCAGTGCCTGCTCAGCCTTCAAGTGCCAC
CATGGGCAGTGTCACATCTCAGATCGAGGGGAGCCCTATTGCCTATGCCAGCCTGGCTTCAGTGGCCATC
ACTGTGAGCAAGAGAATCCATGTATGGGGGAGATAGTCCGTGAAGCCATCCGCCGCCAGAAAGACTACGC
CTCTTGTGCCACGGCGTCCAAGGTGCCCATCATGGAATGCCGCGGGGGCTGCGGGAGCCAGTGCTGCCAG
CCGATTCGAAGCAAGCGGCGGAAATATGTCTTCCAGTGCACGGACGGCTCCTCATTCGTGGAAGAGGTGG
AGAGACACTTGGAATGTGGCTGCCGCGCGTGTTCCTGAGCCCCCC
nt 2705 - nt 4639 of NM_011412.1
Notes:The Slit3 probe used in this study by Yuan et al., 1999 [PMID:10433822] was a "1935-bp library fragment corresponding to position 2644 to 4578 bp of the coding region". Editors Note: the coding region of NM_011412.1 extends between nt61-4632 therefore position 2644 to 4578 bp of the coding region extends between nt 2705 - 4639.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:Swiss Webster
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Yuan W; Zhou L; Chen JH; Wu JY; Rao Y; Ornitz DM, 1999 [PMID:10433822] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1006/dbio.1999.9371] [ PMID:10433822] Yuan W, Zhou L, Chen JH, Wu JY, Rao Y, Ornitz DM 1999 The mouse SLIT family: secreted ligands for ROBO expressed in patterns that suggest a role in morphogenesis and axon guidance. Dev Biol (212):290-306
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE