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EMAGE:5084

Snrk SNF related kinase ( MGI:108104)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5084
Fig6B. [doi:10.1016/S0378-1119(02)00829-6] Kertesz N; Samson J; Debacker C; Wu H; Labastie M. 2002 "Cloning and characterization of human and mouse SNRK sucrose non-fermenting protein (SNF-1)-related kinases" Gene 294(1-2):13-24.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5084Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5084_wholemount_moderate.wlz
5084_wholemount_weak.wlz
5084_wholemount_notDetected.wlz
5084_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5084_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
tail neural tube
strong strong
regionalStrongest expression in the neural tube is found caudally, along the neural tube closure.
heart
strong strong
dorsal aorta
detected detected
regionalmSNRK expression is found in the endothelium and blood cell clusters of the ventral side of aorta (see Fig6c)
brain
detected detected
regionalmSNRK labeling is restricted to the neuroepithelium.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Snrk probeA
Entity Detected:Snrk, SNF related kinase ( MGI:108104)
Sequence:sense strand is shown

>Snrk probeA
CATCATCCAGCGCATGGTGCTCGGGGACATCGCGGACCGAGACGCCATCGTAGAAGCCCTGGAAACCAAC
AGGTACAACCACATTACCGCCACTTACTTTTTACTTGCTGAAAGGATCCTGAGAGAAAAGCAAGAGAAAG
AAATACAGACCAGGTCTGCTAGCCCCAGCAACATCAAGGCCCAGTTTAGGCAGTCATGGCCAACCAAAAT
TGATGTACCCCAAGACCTTGAAGATGATCTCACTGCCACCCCTCTGTCACATGCCACAGTCCCGCAGTCT
CCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAAGAAAG
ATGAGCTCCCGGAGCTGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCAG
TGGGCGCAAGTGTCTCTTCAGGGTGGAAGAAGATGAAGAGGAGGATGAGGAGGACAAGAAGCCTGTGTCC
CTGTCCACGCAGGTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCC
CAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGACGACGAGTTTGACATGGACGAGAACC
nt 1039 - nt 1661 of AF387809.1
Notes:The Snrk probe used in this study by Kertesz et al., 2002 [PMID:12234663] spanned "sequence +890-+1512 of the mSNRK cDNA". Editors Note: the sequence referred to is shown in Fig4 of the paper, and published in GenBank under the accession number AF387809.1. Note that the nucleotide numbering between the two is different, due to the authors use of negative numbering to denote the 5'UTR sequence in the paper.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Kertesz N; Samson J; Debacker C; Wu H; Labastie M. 2002 [PMID:12234663] Indexed and spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0378-1119(02)00829-6] [ PMID:12234663] Kertesz N, Samson J, Debacker C, Wu H, Labastie MC 2002 Cloning and characterization of human and mouse SNRK sucrose non-fermenting protein (SNF-1)-related kinases. Gene (294):13-24
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE