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EMAGE:5087

Sox11 SRY-box containing gene 11 ( MGI:98359)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5087 EMAGE:5087
Fig4c. Copyright: This image is from [doi:10.1002/(SICI)1097-0177(199710)210:2<79::AID-AJA1>3.0.CO;2-6] Hargrave M; Wright E; Kun J; Emery J; Cooper L; Koopman P. "Expression of the Sox11 gene in mouse embryos suggests roles in neuronal maturation and epithelio-mesenchymal induction." Dev Dyn 1997 Oct;210(2):79-86. Reprinted with permission of Wiley-Liss Inc. [PMID:9337129] . Fig4d. Copyright: This image is from [doi:10.1002/(SICI)1097-0177(199710)210:2<79::AID-AJA1>3.0.CO;2-6] Hargrave M; Wright E; Kun J; Emery J; Cooper L; Koopman P. "Expression of the Sox11 gene in mouse embryos suggests roles in neuronal maturation and epithelio-mesenchymal induction." Dev Dyn 1997 Oct;210(2):79-86. Reprinted with permission of Wiley-Liss Inc. [PMID:9337129] .

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Fig4c shows a specimen hybridised with an anti-sense probe and Fig4d shows a specimen hybridised with a sense probe. Image annotations: s - somites.
Expression Pattern Description
Spatial Annotation:
EMAGE:5087Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5087_wholemount_moderate.wlz
5087_wholemount_weak.wlz
5087_wholemount_possible.wlz
5087_wholemount_notDetected.wlz
5087_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5087_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trunk somite
detected detected
limb
detected detected
branchial arch
detected detected
fronto-nasal process
detected detected
Detected in "nasofacial mesenchyme"
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Sox11 probeA
Entity Detected:Sox11, SRY-box containing gene 11 ( MGI:98359)
Notes:The Sox11 probe used in this study by Hargrave et al, 1997 [PMID:9337129] was either "prepared from the Sox11b fragment (nucleotide positions 1,873 to 2,896, Fig 1)" or "the Sox11c.1 cDNA fragment (nucleotide positions 982 to 1,879, Fig1)". Editors Note: it is not specified which of these two possible probes were used for this actual experiment. The sequence shown in Fig1 of Hargrave et al is indicated by the authors as AF009414.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Hargrave M; Wright E; Kun J; Emery J; Cooper L; Koopman P. 1997 [PMID:9337129] . Indexed and spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1002/(SICI)1097-0177(199710)210:2<79::AID-AJA1>3.0.CO;2-6] [ PMID:9337129] Hargrave M, Wright E, Kun J, Emery J, Cooper L, Koopman P 1997 Expression of the Sox11 gene in mouse embryos suggests roles in neuronal maturation and epithelio-mesenchymal induction. Dev Dyn (210):79-86
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE