EMAGE mouse gene expression spatial database

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EMAGE:5093

Sox3 SRY-box containing gene 3 ( MGI:98365)
TS19 (11.5 dpc)
in situ hybridisation

Data Images


Fig2-Sox3. [doi:10.1371/journal.pbio.0050234] [PMID:17803355] Copyright: This image is from Ahituv et al., PLoS Biol 2007 Sep 5(9):e234, an open-access article distributed under the terms of the Creative Commons Attribution License

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

5093_wholemount_moderate.wlz

5093_wholemount_weak.wlz

5093_wholemount_notDetected.wlz

5093_wholemount_strong.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:5093_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

detected

This expression pattern is not described by the authors.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Sox3 probeC
Entity Detected:	Sox3, SRY-box containing gene 3 ( MGI:98365)
Sequence:	sense strand is shown >Sox3 probeC CCAGCTCGAGAGAACGCATCAGGTGAGAGAAGCCCGCGAGTTCCCGCCGACTTTGCGCGGAGCCCTTCGG CTAGCCTGCCCTTCCCGCCTGAGCTGCCGGCCCGCCGGCCCCTGAGCACCACTCCGACGGAGTCCCCCGG CCTTTTCACGGTGGCCGCTCCAGCCCCCGGAGCGCCGTCTCCTCCCGCCACGCTGGCGCACCTCCTTCCC GCCCCGGCGATGTACAGCCTGCTGGAGACTGAACTCAAGAACCCCGTGGGGCCGCCCACCCCAGCCGCGG GCACCGGCGTCCCCGCAGCTCCCGGCGCTGCAGGCAAGAGTGGCGCGAACCCAGCCGGCGGAGCGAACGC AGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGGTGGTGGCGGCGGGGGCAGCGACCAGGAC CGCGTCAAGCGACCCATGAACGCGTTCATGGTGTGGTCCCGCGGGCAGCGGCGCAAGATGGCCCTGGAGA ACCCCAAGATGCACAACTCCGAGATCAGCAAGCGCTTGGGCGCCGACTGGAAACTGCTGACCGATGCGGA GAAGCGGCCGTTCATCGACGAGGCCAAGCGACTGCGTGCGGTGCACATGAAGGAGTACCCGGACTACAAG TACCGGCCCCGCCGCAAGACCAAGACGCTGCTCAAGAAGGACAAGTACTCGCTGCCCGGCGGCCTCCTGC CCCCGGGCGCCGCCGCAGCCGCCGCCGCTGCCGCCGCAGCCGCCGCCGCCAGCAGCCCGGTGGGCGTGGG CCAGCGCCTGGACACGTACACGCACGTGAACGGCTGGGCCAACGGCGCCTACTCGCTCGTGCAGGAGCAG CTGGGCTACGCGCAGCCCCCGAGCATGAGCAGCCCGCCGCCGCCACCCGCGCTGCCTCAGATGCACCGCT ACGACATGGCCGGCCTGCAGTACAGCCCCATGATGCCACCCGGCGCCCAGAGCTACATGAACGCCGCCGC CGCCGCTGCCGCCGCCTCGGGCTACGGGGGCATGGCGCCCTCCGCCGCGGCCGCCGCCGCCGCCGCCTAC GGGCAGCAGCCCGCCACCGCTGCCGCCGCGGCCGCCGCCGCCGCCGCCATGAGCCTGGGCCCCATGGGCT CCGTGGTGAAGTCGGAGCCCAGCTCTCCGCCGCCCGCCATCGCTTCGCACTCGCAGCGCGCGTGCCTCGG CGACCTGCGCGACATGATCAGCATGTACCTGCCACCTGGCGGGGACGCGGCCGACGCCGCTTCTCCGCTC CCAGGCGGTCGGCTGCACGGCGTGCACCAGCACTACCAGGGCGCCGGGACTGCGGTCAATGGAACGGTGC CGCTGACCCACATCTGAGCTCCGGCCCGCGCTCCCAGCTCTTCGCCCCCACCCCGCCCCACACCCCCCAC GTTGGGACGCCTTGCTGTTTAGCTTTGCTCGCCTGGGACCGTTGCCTTGTACCGAAGATGAGGAGGACCG AAAGTTTGGCCGTAACTGTCGGGGTTTTGTACAAAAGCGAGAAGTCCCGAGCAGCGGAAATGGGACTTGC TAGAGCCGCTGGCTTCTGACCACTGCCCCTCCCTCCCCCTCTGGCTGGGAATCGCTGTGGTGTTTGCGGA GAAACCGCGGCCCCTTCCTCTTCCCGGATTCCTAGGTTCTTCTGTTGCAGTTGAAAATGTCTTGTTAGTT TGCTATTAATCGAGAACTGAGTGAGGTTGCCCGCCCCCAAGAACTGCAATGCCTCCACCCCCAGTCGTAT TGCTTCTGTTTTCCTCTGGCTTTTTTTTGGGGGGGGGGTGCTGGCCGCGCCAATTGGCGCGACAGCTAAA GCCAATGTTAATTTATAGCCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCT GTCCAGTGCGCGTTTAGGCTGTTGAGTTTGTGATTTCTGCAGTGATCTATTTGCTATTTCGTGTACGCAT TTCGTTCGGGTGGTGGGGAAGGGGTTATTTTGTTCCAGGTTTTTTCAAAGTTTTGTTCTTAATTGCTAAG TGAGAGATCAATAAATTTTATAACCAATAAAAAAAAAAAAAAAAAAA
	nt 1 - nt 2077 of BC063061.1
Notes:	The Sox3 probe used in this study by Ahituv et al., 2007 [PMID:17803355] was transcribed from "IMAGE 5717161".
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	11.5 dpc
Theiler Stage:	TS19
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Ahituv N; Zhu Y; Visel A; Holt A; Afzal V; Pennacchio LA; Rubin EM. 2007 [PMID:17803355] . Indexed and spatially mapped by EMAGE
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1371/journal.pbio.0050234] [ PMID:17803355] Ahituv N, Zhu Y, Visel A, Holt A, Afzal V, Pennacchio LA, Rubin EM 2007 Deletion of ultraconserved elements yields viable mice. PLoS Biol (5):e234
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source