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EMAGE:5096

Sox7 SRY-box containing gene 7 ( MGI:98369)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:5096
FigS1c [doi:10.1242/jcs.03081] Matsui T; Kanai-Azuma M; Hara K; Matoba S; Hiramatsu R; Kawakami H; Kurohmaru M; Koopman P; Kanai Y "Redundant roles of Sox17 and Sox18 in postnatal angiogenesis in mice." 2006 J Cell Sci 119:3513-26. [PMID:16895970]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5096Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5096_wholemount_moderate.wlz
5096_wholemount_weak.wlz
5096_wholemount_possible.wlz
5096_wholemount_notDetected.wlz
5096_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5096_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
dorsal aorta
detected detected
Sox7 expression is found in the developing vascular endothelial cells of the surface smaller microvasculatures, the intersomite blood vessels and the dorsal aorta.
arterial system
detected detected
regionalSox7 expression is found in the developing vascular endothelial cells of the surface smaller microvasculatures, the intersomite blood vessels and the dorsal aorta.
venous system
detected detected
regionalSox7 expression is found in the developing vascular endothelial cells of the surface smaller microvasculatures, the intersomite blood vessels and the dorsal aorta.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Sox7 probeA
Entity Detected:Sox7, SRY-box containing gene 7 ( MGI:98369)
Sequence:sense strand is shown

>Sox7 probeA
GCTGCTACCGCGAAGGTGCAGCTGCTGCCCCTGGCAGTGTGGACACGTATCCCTACGGGCTGCCCACACC
TCCGGAGATGTCGCCCCTGGATGCGCTGGAGCCAGAGCAGACCTTCTTCTCGTCCTCATGTCAGGAGGAG
CATGGTCACCCCCATCACCTCCCCCATCTACCAGGGCCCCCTTACTCACCGGAGTTCACACCTAGTCCCC
TCCACTGCAGCCACCCTCTAGGTTCTTTAGCCCTTGGCCAATCCCCAGGGGTTTCTATGATGTCCTCTGT
TTCTGGATGTCCCCCATCTCCAGCCTATTACTCCCATGCCACCTACCACCCTCTCCACCCCAACCTCCAG
GCCCACCTGGGCCAGCTGTCCCCACCTCCGGAGCACCCTGGCTTTGACACCTTGGATCAGCTAAGCCAGG
TGGAACTTCTGGGAGACATGGATCGCAATGAATTTGATCAGTATTTGAACACTCCCGGCCACCCTGACTC
TGCTGCAGGGGTTGGAACCCTCACTGGGCATGTCCCGCTCTCCCAGGGGACTCCCACAGGCCCTACAGAG
ACCAGCCTCATCTCAGTCCTGGCTGATGCCACGGCCACGTATTACAACAGCTACAGTGTGTCATAGAGCT
GGAGGAATGGAGCCTGGCCCAGCCCTGCCATCCCCTCCTCCCTATGAAGCACTGAGCTGAGCAGAAACTG
TGGCGATGCCACTCCTTGGTGGCAAGAGGTCAAAACTGCTGTTCCAGAGCCTTCCGGTCAAAAGCCAGGA
TCCAGCGCTCCTTCTGTCCCTTTAAATGTGTTTTGTCGGCTTCATCAAGGAAGCACAGCCTT
nt 568 - nt 1399 of NM_011446.1
Notes:The Sox7 probe used in this study by Matsui et al., 2006 [PMID:16895970] is indicated as that used by Taniguchi et al, 1999 [PMID:10320775] . Editors Note: Taniguchi et al. did not perform in situ hybridisations, however they do describe a probe used for Northern blotting as "A fragment of 832 nt ( Fig. 1; nt 568-1399) derived from the cDNA". The sequence shown in Fig1 is identical to NM_011446.1.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Matsui T; Kanai-Azuma M; Hara K; Matoba S; Hiramatsu R; Kawakami H; Kurohmaru M; Koopman P; Kanai Y. 2006. [PMID:16895970] . Indexed and spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1242/jcs.03081] [ PMID:16895970] Matsui T, Kanai-Azuma M, Hara K, Matoba S, Hiramatsu R, Kawakami H, Kurohmaru M, Koopman P, Kanai Y 2006 Redundant roles of Sox17 and Sox18 in postnatal angiogenesis in mice. J Cell Sci (119):3513-26
 [ PMID:10320775] Taniguchi K, Hiraoka Y, Ogawa M, Sakai Y, Kido S, Aiso S 1999 Isolation and characterization of a mouse SRY-related cDNA, mSox7. Biochim Biophys Acta (1445):225-31
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE