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EMAGE:5123

Stmn2 stathmin-like 2 ( MGI:98241)
TS16
in situ hybridisation

Data Images
EMAGE:5123
Fig2H. [doi:10.1038/75989] Streicher J; Donat MA; Strauss B; Sporle R; Schughart K; Muller GB. 2000 "Computer-based three-dimensional visualization of developmental gene expression". Nat Genet 25:147-152. [PMID:10835627] . © Nature Publishing Group. Reproduced with permission from Nat Genet.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5123Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5123_wholemount__moderate.wlz
5123_wholemount__possible.wlz
5123_wholemount__notDetected.wlz
5123_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5123_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trigeminal v ganglion
detected detected
regionalThe Sgcn10 signal coincides with a cortical layer of cells in the neural-crest-derived dorsal portion and the trigeminal placode-derived ventral portion of the ganglion.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Stmn2 probeA
Entity Detected:Stmn2, stathmin-like 2 ( MGI:98241)
Notes:The Stmn2 (Scgn10/SCG10) probe used in this study by Streicher et al., 2000 [PMID:10835627] , is indicated as that used by Stein et al, 1988 [PMID:3272176] . Editors note: Stein et al, 1988 did not perform in situ hybridisations. However they did use several probes to perform Northern hybridisations and S1 Nuclease Protections, which cover various regions of the cDNA.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Streicher J; Donat MA; Strauss B; Sporle R; Schughart K; Muller GB. 2000 [PMID:10835627] . Indexed and spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1038/75989] [ PMID:10835627] Streicher J, Donat MA, Strauss B, Sporle R, Schughart K, Muller GB 2000 Computer-based three-dimensional visualization of developmental gene expression. Nat Genet (25):147-52
 [ doi:10.1016/0896-6273(88)90177-8] [ PMID:3272176] Stein R, Mori N, Matthews K, Lo LC, Anderson DJ 1988 The NGF-inducible SCG10 mRNA encodes a novel membrane-bound protein present in growth cones and abundant in developing neurons. Neuron (1):463-76
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE