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EMAGE:5153

Tax1bp1 Tax1 (human T-cell leukemia virus type I) binding protein 1 ( MGI:1289308)
TS19 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:5153
Fig1M. [doi:10.1111/j.1525-142X.2004.04050.x] Lehoczky JA; Williams ME; Innis JW. 2004. "Conserved expression domains for genes upstream and within the HoxA and HoxD clusters suggests a long-range enhancer existed before cluster duplication". Evol Dev 6(6):423-430 [PMID:15509224] .

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5153Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5153_wholemount_moderate.wlz
5153_wholemount_weak.wlz
5153_wholemount_possible.wlz
5153_wholemount_notDetected.wlz
5153_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5153_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
forelimb bud
detected detected
regionalExpressed distally
hindlimb bud
detected detected
regionalExpressed distally
genital tubercle
detected detected
regionalExpressed distally
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Tax1bp1 probeA
Entity Detected:Tax1bp1, Tax1 (human T-cell leukemia virus type I) binding protein 1 ( MGI:1289308)
Sequence:sense strand is shown

>Tax1bp1 probeA
GCCCTCAACAAGTCTCAAGGTGTCTCAACACATGTTCTGAGCAAAATGGGCTCCTTCCTCCACTGTCAAG
TGCACAGACAGTTCTTCAGTATGGCAACCCTTACTCAGCACAGGAAACAAGAGATGGAGCAGATGGTGCT
TTTTATCCAGATGAAATCCAAAGGCCACCTGTGCGAGTCCCATCTTGGGAAGACAATGTTGTCTGTAGCC
AGCCTGCTCGAAACCTTAGCCGGCCGGATGGTTTAGAGGACCCCGAAGACAGCAGAGAAGACGAAAATGT
GCCCATTCCTCCTGATCCAGCAAACCAGCACTTACGTAGTCATGGAGCAGGCTTTTGCTTTGATTCCAGC
TTTGATGTTCACAAGAAATGTCCCCTCTGTGAATTAATGTTCCCTCCTAACTACGATCAGACCAAATTTG
AAGAACACGTTGAAAGTCACTGGAAGGTGTGTCCAATGTGCAGCGAGCAGTTCCCGCCGGACTACGACCA
GCAGGGGTTTGAAAGGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGCTTGTAATA
AGAGGTAGTACAATTTAGCAATTACAAAACAAACCACATCTCAGAGGCTAAGGAGATGCCAGGTGTCACT
TTCAGGTTCCTCCTCCACACTTTCCTGATGATGGAGAACTTCTTTAGCGTGTGCTGTCACTAGGGCCAGG
GTACAGCTGTGACTACATACAATGAATACAGTTTTAATCTCTGTTAATCTTGTCTGCTGTAAGAAGAGTG
CTTCTGGGTTTGCATCTCTGTCTATCCTCCAGTTAGCAGAAGTGTGTGAAGAACACAAGAATTATTTTAA
TGTTACCGAATTGCAAACATAAACATGTAGTAGTTAGATCCTCAGCACAATCACACTTACAAGTTTCTGT
ACACCTTGGCGATTG
nt 2010 - nt 2934 of NM_025816.2
Notes:The Tax1bp1 probe template used in this study by Lehoczkyet al., 2004. [PMID:15509224] was "amplified from an E12.5 C57Bl/6 mouse limb bud cDNA library and cloned into polymerase chain reaction-4 Topo vector (Invitrogen, Carlsbad, CA, USA). Primer pairs were as follows: Tax1bp1ex15.F 5'-GCCCTCAACAAGTCTCAAGG and Tax1bp1_3'UTR.R 5'-CAATCGCCAAGGTGTACAGA."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:11.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Lehoczky JA; Williams ME; Innis JW. 2004. [PMID:15509224] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1111/j.1525-142X.2004.04050.x] [ PMID:15509224] Lehoczky JA, Williams ME, Innis JW 2004 Conserved expression domains for genes upstream and within the HoxA and HoxD clusters suggests a long-range enhancer existed before cluster duplication. Evol Dev (6):423-30
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE