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EMAGE:5186

Trpm1 transient receptor potential cation channel, subfamily M, member 1 ( MGI:1330305)
TS19 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:5186
Fig 2d. [doi:10.1073/pnas.072087599] Copyright: This image is from Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA rd; Pavan WJ, Proc Natl Acad Sci U S A 2002 Apr 2;99(7):4471-6. [PMID:11917121] Copyright 2002 National Academy of Sciences, U.S.A.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5186Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5186_wholemount_moderate.wlz
5186_wholemount_notDetected.wlz
5186_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5186_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
pigmented retinal epithelium
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3793696
Entity Detected:Trpm1, transient receptor potential cation channel, subfamily M, member 1 ( MGI:1330305)
Sequence:sense strand is shown

>MGI:3793696
AAGCTTCCGGACTCTCTACAACAACTTGTTTGGCCCTAAGAGGGTAGAGCTCAGCAGACACACAGTGTCC
TGTGCCTCCCAGAGTAACATGTGGTTCCTTGATGTGCTTCCCCAAAAGCCCACCTGTGCAGAATGCAACT
CTTCACCTCACCTGTCCCAAACTGACATCACCCCACCTCTGCCCTGACACCCAGTGCAGGGCCTCCTAGC
TTTCACATGCAGCCATTCACATCGCCTCTCAAGACTGGGCCAGGCAGTGCAACCTGTCAAGCATGTCTGT
CCTCCCCTCCTTCCTACAATAGCGCCCCCTCTGGGCCCCATGCCTCTGCTCTCTCAGCCCGTTCTCCTCC
CCACTGATCACTGGCGCTCCTGTTGTCTTCCAAGGCAAGGAACAAGGAAAAGCATCTTTTGCCCACAAAA
GTTTAGGGCTCCCCGCTGTTCAACCATAGCCAACCTCACTGTACATCGGAGTCATCCAGGCCAGCTGCCA
CACACAAGCCTTCCCCACCCTATCCCAATAGACCCTATTCCTCCATCAAAATCAAAGCTAACTCCTGGCC
TGCCACATTGCTTCTTCTTGCTCCAGCCTGTTAAACCTCCAATAAATGTCAGATCTGTGGGAAGCCTTCC
TCACTCTCACTCCACAGTTTGTACAGAGAGCGAGAGCCTCGTTTGGTTCTACTTACAAGGAAGGCTTTGT
GTCTGTCTGTCCTTCCCAACTGACTTCTGTTGACAGAAGCAGTTTCCACATGAAAGCGTTGACTCACCTG
GATGTTGTCATTAATTAATAGTGATACAAAATATTGACACTTCTTTTCCTGCTTCTTTGTTATGCAGCCG
AAAGCACTTAAGCTTCTGGGAATGGAAGTAAGTAGGACATGTTTGTGGC
nt 1881 - nt 2769 of NM_018752.3
Notes:The Trpm1 (Mlsn1) probe template used in this study by Loftus et al., 2002 [PMID:11917121] was PCR amplified from B16F10Y total RNA using the following primers: MLSN R T7-GCGGGTAATACGACTCACTATAGGGGCCACAAACATGTCCTACTTAC; MLSN F T3-GCGCGAATTAACCCTCACTAAAGGGAAGCTTCCGGACTCTCTAC. Editors note: there are two transcript variant RefSeqs of mouse Trpm1 (NM_018752.3 - transcript variant 1 and NM_001039104.2 - transcript variant 2). Pair-wise BLAST fails to find a match between MLSN R and NM_001039104.2.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:FVB/NJ
Age:11.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA 3rd; Pavan WJ. 2002 [PMID:11917121] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1073/pnas.072087599] [ PMID:11917121] Loftus SK, Larson DM, Baxter LL, Antonellis A, Chen Y, Wu X, Jiang Y, Bittner M, Hammer JA, Pavan WJ 2002 Mutation of melanosome protein RAB38 in chocolate mice. Proc Natl Acad Sci U S A (99):4471-6
Links:MGI:3793697 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI