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EMAGE:5187

Tsc22d1 TSC22 domain family, member 1 ( MGI:109127)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:5187
Fig 1E Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(99)00055-6] Mech Dev 84: 147-51, Dohrmann CE; Belaoussoff M; Raftery LA, Dynamic expression of TSC-22 at sites of epithelial-mesenchymal interactions during mouse development. Copyright 1999. [PMID:10473130]

Expression pattern clarity: one star
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: drg, dorsal root ganglion; h, heart; lb, limb bud; op, optic vesicle; ot, otic vesicle.
Expression Pattern Description
Spatial Annotation:
EMAGE:5187Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5187_wholemount_moderate.wlz
5187_wholemount_possible.wlz
5187_wholemount_notDetected.wlz
5187_wholemount_strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5187_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
eye
strong strong
otocyst
strong strong
Expression is strong in the otic vesicle
limb
strong strong
dorsal root ganglion
strong strong
heart
detected detected
central nervous system
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Tsc22d1 probeA
Entity Detected:Tsc22d1, TSC22 domain family, member 1 ( MGI:109127)
Sequence:sense strand is shown

>Tsc22d1 probeA
GACTGGCTCCCCTCCGGCCACCACGCAGCCACAGGGGACCACACAGCCCCCTGCACAGCCAGCATCCCAG
GGCTCAGGATCAACCGCATAGCCTCCTAGGCCCCAACAGAACTGGCTGCTGCTGCTGCTGTCTGAACTGA
ACAGACCGAAGAGATGTGCTAGAGAGAAGCCGCCTCCACAGTCACCCATTTCATTGCTGTCTACGAAAGA
GACGTGAGACTCACACGCTGTTCTCGCTTTCTCCCCAGTATTAAGCACTCATAAGCTTTTGGCTTGAAGA
AATGTACTAGTTGAGTGAATTAAAGGTTAATCAGAGAGTGAGCAGGGATGTGCCCTGTGCAACGTGGCAG
ATGTCTGAGGAATGGTTTAATTGACCCCGAGGAGCTCTGTGCCTTTTCAACCCTCCCCAGCCGCCCACCC
TGCTTCTGAGAGCTCGGGCGGCTCGCCTTCGTGGGGCTCGCCTGCGTGGGGTTCGGAAAGTGGGCTGCTC
CTGGATTCTGCGCTCTCTTCTCCTTCCCTTCAAAGAACTCGGAGAGGCCAGAAACAAGACTGCAATGGGG
GGCGGGGGGAGGGATGATGCAGTCCTTATACAAAACCGACAACTGTCACCAAAGCTTATAAAACACGATA
GTACTGTCCCTCTTTTCTGAACCATCAGAAGACACAAAACTGTTAGTGACATAACGGTGACAGGTAGCTG
GGACCTAGGCTATCTTATTATGAAGGTTGTTTTGCTTGTTGTATATTTGTGTATGTAGTGTAACGAATTT
GTACCATAGAGGACTGTCCGTAACTACTGTTTAGCTTCTACACATTGAAATGTAGATGTTTCATTGGCTG
TCTGAAAAGGTGTGGCTTGTCCTTCCTAGAGA
nt 3406 - nt 4277 of NM_207652.1
Notes:The Tsc22d1 probe template used in this study by Dohrmann et al., 1999 [PMID:10473130] was "a 0.9 kb PstI-BglII fragment of the 3' untranslated region". Editors note: Of the two Tsc22d1 transcript variant RefSeqs, a ~0.9kb BglII/PstI fragment can only be identified in the 3'UTR of transcript variant 1 (NM_207652.1).
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Dohrmann CE; Belaoussoff M; Raftery LA. 1999 [PMID:10473130] . Indexed and spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(99)00055-6] [ PMID:10473130] Dohrmann CE, Belaoussoff M, Raftery LA 1999 Dynamic expression of TSC-22 at sites of epithelial-mesenchymal interactions during mouse development. Mech Dev (84):147-51
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE