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EMAGE:5193

Tyr tyrosinase ( MGI:98880)
TS19 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:5193
Fig 2a. [doi:10.1073/pnas.072087599] Copyright: This image is from Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA rd; Pavan WJ, Proc Natl Acad Sci U S A 2002 Apr 2;99(7):4471-6. [PMID:11917121] Copyright 2002 National Academy of Sciences, U.S.A.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5193Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5193_wholemount__moderate.wlz
5193_wholemount__weak.wlz
5193_wholemount__notDetected.wlz
5193_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5193_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
pigmented retinal epithelium
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1903271
Entity Detected:Tyr, tyrosinase ( MGI:98880)
Sequence:sense strand is shown

>MGI:1903271
GGCCAAAACATGTGGGTAGTCACTCCAGGCGGTTGCTGGAAAAGAAGTCTGTGACACTCATTAACCTATT
GGTGCAGATTTTGTATGATCTAAAGGAGAAAATGTTCTTGGCTGTTTTGTATTGCCTTCTGTGGAGTTTC
CAGATCTCTGATGGCCATTTTCCTCGAGCCTGTGCCTCCTCTAAGAACTTGTTGGCAAAAGAATGCTGCC
CACCATGGATGGGTGATGGGAGTCCCTGCGGCCAGCTTTCAGGCAGAGGTTCCTGCCAGGATATCCTTCT
GTCCAGTGCACCATCTGGACCTCAGTTCCCCTTCAAAGGGGTGGATGACCGTGAGTCCTGGCCCTCTGTG
TTTTATAATAGGACCTGCCAGTGCTCAGGCAACTTCATGGGTTTCAACTGCGGAAACTGTAAGTTTGGAT
TTGGGGGCCCAAATTGTACAGAGAAGCGAGTCTTGATTAGAAGAAACATTTTTGATTTGAGTGTCTCCGA
AAAGAATAAGTTCTTTTCTTACCTCACTTTAGCAAAACATACTATCAGCTCAGTCTATGTCATCCCCACA
GGCACCTATGGCCAAATGAACAATGGGTCAACACCCATGTTTAATGATATCAACATCTACGACCTCTTTG
TATGGATGCATTACTATGTGTCAAGGGACACACTGCTTGGGGGCTCTGAAATATGGAGGGACATTGATTT
TGCCCATGAAGCACCAGGGTTTCTGCCTTGGCACAGACTTTTCTTGTTATTGTGGGAACAAGAAATTCGA
GAACTAACTGGGGATGAGAACTTCACTGTTCCATACTGGGATTGGAGAGATGCAGAAAACTGTGACATTT
GCACAGATGAGTACTTGGGAGGTCGTCACCCTGAAAATCCTAACTTACTCAGCCCAGCATCCTTCTTCTC
CTCCTGGCAGATCATTTGTAGCAGATCAGAAGAGTATAATAGCCATCAGGTTTTATGCGATGGAACACCT
GAGGGACCACTATTACGTAATCCTGGAAACCATGACAAAGCCAAAACCCCCAGGCTCCCATCTTCAGCAG
ATGTGGAATTTTGTCTGAGTTTGACCCAGTATGAATCTGGATCAATGGATAGAACTGCCAATTTCAGCTT
TAGAAACACACTGGAAGGATTTGCCAGTCCACTCACAGGGATAGCAGATCCTTCTCAAAGTAGCATGCAC
AATGCCTTACATATCTTTATGAATGGAACAATGTCCCAAGTACAGGGATCGGCCAACGATCCCATTTTTC
TTCTTCACCATGCTTTTGTGGACAGTATTTTTGAACAATGGCTGCGAAGGCACCGCCCTCTTTTGGAAGT
TTACCCAGAAGCCAATGCACCTATCGGCCATAACAGAGACTCTTACATGGTTCCTTTCATACCGCTCTAT
AGAAATGGTGATTTCTTCATAACATCCAAGGATCTGGGATATGACTACAGCTACCTCCAAGAGTCAGATC
CAGGCTTTTACAGAAATTATATTGAGCCTTACTTGGAACAAGCCAGTCGTATCTGGCCATGGCTTCTTGG
GGCAGCACTGGTGGGAGCTGTTATTGCTGCAGCTCTCTCTGGGCTTAGCAGTAGGCTATGCCTTCAGAAG
AAGAAGAAGAAGAAGCAACCCCAGGAGGAAAGGCAGCCACTCCTCATGGACAAAGACGACTACCACAGCT
TGCTGTATCAGAGCCATCTGTGAACATCCTAGGAAACAGAGTGGGACTGAAGGGTTTTACCTCACTCGAC
CTATTTGTTGGTGTTTCTACAAATTTAAACTAGTATAAAACATAGACCATAGCTGTTTGGCTTTTTTTCA
GACCCATGTTTTTTCCTAAGTCCTAGTTTCTAAGAAATGACTGGGATTTGCTAAAATATATATATATATA
TAAATAATAACTTACTAATAGCTAAATAAAATTTCCTCTTAC
nt 1 - nt 1932 of AK014619
Notes:The Tyr probe used in this study by Loftus et al., 2002 [PMID:11917121] was transcribed from "cDNA clone 4633402C07". Editors Note: the clone corresponds to RIKEN clone 4633402C07
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:FVB/NJ
Age:11.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA 3rd; Pavan WJ. 2002 [PMID:11917121] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1073/pnas.072087599] [ PMID:11917121] Loftus SK, Larson DM, Baxter LL, Antonellis A, Chen Y, Wu X, Jiang Y, Bittner M, Hammer JA, Pavan WJ 2002 Mutation of melanosome protein RAB38 in chocolate mice. Proc Natl Acad Sci U S A (99):4471-6
Links:MGI:3793665 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE