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EMAGE:5273

Ephb3 Eph receptor B3 ( MGI:104770)
TS14 (15 Somite no.)
in situ hybridisation

Data Images
EMAGE:5273
Fig5C Copyright: Reprinted with permission from Elsevier from [doi:10.1016/0925-4773(94)90091-4] Mech Dev 47(1): 3-17, Becker N; Seitanidou T; Murphy P; Mattei MG; Topilko P; Nieto MA; Wilkinson DG; Charnay P; Gilardi-Hebenstreit P, Several receptor tyrosine kinase genes of the Eph family are segmentally expressed in the developing hindbrain. Copyright 1994. [PMID:7947319]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: r5 - rhombomere 5.
Expression Pattern Description
Spatial Annotation:
EMAGE:5273Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5273_wholemount__moderate.wlz
5273_wholemount__weak.wlz
5273_wholemount__notDetected.wlz
5273_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5273_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
head mesenchyme
weak weak
regionalExpressed in mesenchyme of the developing facial region.
trunk somite
detected detected
regionalExpression is detected in posterior (developing) somites, with the more recently formed somites having a higher level of expression.
rhombomere 05
detected detected
foregut
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Ephb3 probeB
Entity Detected:Ephb3, Eph receptor B3 ( MGI:104770)
Sequence:sense strand is shown

>Ephb3 probeB
CAGCTCAATGACGGACAGTTCACGGTCATCCAGCTTGTGGGCATGTTACGAGGCATTGCTGCTGGCATGA
AGTACTTGTCTGAGATGAACTACGTGCACCGTGACCTTGCTGCCCGAAACATCCTTGTCAACAGCAACTT
GGTCTGCAAAGTCTCTGACTTTGGCCTCTCCCGCTTCCTGGAGGATGACCCATCAGACCCCACCTACACC
AGCTCCCTGGGTGGGAAGATCCCTATCCGCTGGACCGCCCCGGAGGCCATAGCCTATCGGAAGTTTACGT
CTGCCAGCGATGTCTGGAGCTATGGGATTGTCATGTGGGAGGTCATGAGCTACGGAGAGCGACCCTACTG
GGATATGAGCAACCAGGATGTCATTAATGCTGTAGAGCAAGACTATCGGTTACCACCCCCCATGGACTGC
CCCACCGCGCTGCACCAGCTCATGCTGGACTGTTGGGTGCGGGACCGGAACCTCAGGCCCAAGTTCTCTC
AAATCGTCAACACACTAGACAAACTTATCCGCAATGCTGCCAGCCTCAAGGTCACCGCCAGTGCCCCATC
TGGCATGTCCCAGCCCCTCCTGGACCGCACAGTCCCAGATTATACGACCTTCACGACAGTGGGTGACTGG
CTAGATGCCATCAAGATGGGGAGGTATAAAGAGAGCTTTGTCGGTGCTGGGTTTGCATCCTTTGACCTGG
TGGCCCAGATGACTGCAGAAGATCTGCTAAGGATTGGGGTCACTTTGGCTGGGCACCAGAAGAAGATCCT
CTGCAGTATCCAGGACATGCGGCTGCAGATGAACCAGACCCTGCCTGTGCAGGTCTGACACTCAGCTCCA
ACGAGGGGGGGGTGCCCCCCCAGGACTGCACAAGGATTCTGACCAGCCAGCTGGACTTTTGGATGCCTGG
CCTCTGGCTGTGGCCCAGAAGATGGAAGTTTGGGGGAGGACCCTAGCTGTGACTTCTCCAGGCCTGTGCT
CCCTCCCAGGAAGTGTGCCCCAAACCTCTTCATATTGAAGATGGATTAGAAGAGGGGGTGATGTCCCCTC
CCCAGATGCCTTGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGT
TTTACAAC
Notes:The Ephb3 (Sek-4) probe used in this study by Becker et al., 1994 [PMID:7947319] is described as "1.6 kb long, and corresponds to the entire cloned cDNA." Editors Note: See Fig 1A therein for a cartoon representation of the 1.6kb Sek-4 cDNA clone. As indicated, around 0.5kb of the 3'-most sequence was not determined. X76012.1 is the GenBank sequence submission from Becker to accompany this paper and corresponds to the rest of the sequence (1.1kb) of this clone.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:OF1
Age:15 Somite no.
Theiler Stage:TS14
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Becker N; Seitanidou T; Murphy P; Mattei MG; Topilko P; Nieto MA; Wilkinson DG; Charnay P; Gilardi-Hebenstreit P, 1994 [PMID:7947319] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/0925-4773(94)90091-4] [ PMID:7947319] Becker N, Seitanidou T, Murphy P, Mattei MG, Topilko P, Nieto MA, Wilkinson DG, Charnay P, Gilardi-Hebenstreit P 1994 Several receptor tyrosine kinase genes of the Eph family are segmentally expressed in the developing hindbrain. Mech Dev (1994):3-17
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE