EMAGE mouse gene expression spatial database

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EMAGE:5347

Fjx1 four jointed box 1 (Drosophila) ( MGI:1341907)
TS17 (10.5 dpc)
in situ hybridisation

Data Images


Fig 1G Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(98)00218-4] Mech Dev 80(2): 213-7, Ashery-Padan R; Alvarez-Bolado G; Klamt B; Gessler M; Gruss P, Fjx1, the murine homologue of the Drosophila four-jointed gene, codes for a putative secreted protein expressed in restricted domains of the developing and adult brain. Copyright 2000. [PMID:10072791]	Fig 1H Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(98)00218-4] Mech Dev 80(2): 213-7, Ashery-Padan R; Alvarez-Bolado G; Klamt B; Gessler M; Gruss P, Fjx1, the murine homologue of the Drosophila four-jointed gene, codes for a putative secreted protein expressed in restricted domains of the developing and adult brain. Copyright 2000. [PMID:10072791]

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Image annotations: TC, tectum; CTX, cortex; AQ, aqueduct. The line in image G indicates the section plane of H.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

5347_wholemount__moderate.wlz

5347_wholemount__possible.wlz

5347_wholemount__notDetected.wlz

5347_wholemount__strong.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:5347_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

midbrain

detected

regional

Expression is detected in the dorsal mesencephalon (tectum), in the tectal neuroepithelium.

forebrain

detected

regional

Expression is detected in the prosencephalon (presumptive isocortex). In the cortex, fjx1 is expressed specifically by a restricted dorsolateral patch of the neuroepithelium.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Fjx1 probeA
Entity Detected:	Fjx1, four jointed box 1 (Drosophila) ( MGI:1341907)
Sequence:	sense strand is shown >Fjx1 probeA GGCCTGGAGGAGCAGGTTCCCCGGGGCTTTTCCGAAGCCCAAGCAGCAGCGTGGCTGGAGGTGGCACGGG GTGCTCGGGTGGTGGCTCTGGATCGCGGGGGCTGCGGACGCAGTTCCAACCGCCTAGCCCGCTTTGCCGA CGGCACCCGTGCCTGTGTACGCTACGGCATCAACCCAGAGCAGATACAGGGCGAGGCCCTGTCCTACTAC CTTGCGCGCCTGCTGGGCCTCCAGCGCCACGTGCCGCCGCTGGCACTGGCTCGGGTGGAGGCTCGGGGCG CGCAGTGGGTGCAGGTGCAGGAGGAGCTGCGCACCGCGCACTGGACCGAGGGCAGCGTGGTGAGCCTGAC GCGCTGGCTGCCTAACCTCACCGACGTGGTGGTGCCCGAGCCCTGGCGATCAGAGGACGGCCGTCTGCGG CCCCTGCGCGACGCCGGGGGCGAGCTGACCAACCTCAGCCAGGCGGAGCTGGTGGACTTGGTACAATGGA CCGATCTGATCCTCTTCGATTACCTGACGGCCAACTTTGACCGGCTTGTGAGCAACCTCTTCAGCTTACA GTGGGACCCACGCGTTATGCACCGCGCTACGAGCAACCTGCACCGAGGACCAGGAGGGGCGTTGGTCTTT CTGGACAATGAGGCGGGCTTGGTGCACGGCTACCGGGTAGCCGGCATGTGGGACAAGTATAACGAACCGC TGCTACAGTCGGTGTGTGTATTCCGAGAGCGGACTGCTAGGCGCGTCTTGGAGCTGCACCGGGGTCAGGA CGCGGCGGCCCGGTTGCTGCGCCTCTACAGTCGCCACGAACCGCGTTTCCCAGAGCTGGCGGAGCTCTCA GAACCCCACGCTCAGCTGCTACAGCGCCGCCTTGACTTCCTCGCCAAACACATTTTGCACTGCAAGGCCA AGTACGGCCGCCGGCCGGGGACTTAATAACACTCCGAGGAAGAGAGGGACTGGGGTATGAATGATGGGGG TTAGGGCTGTCTTCTCTGCCACGGGCAACGACCAACCAGCCAACGCCCACCCAATGGTCTGATCGCCAAG CTGTCTAAAAAAAAAAATTGTGTGTTACCCACTTGCCCCTTTCTTTTCATGCCAGGCTGTTTCCTTTCCA AGTTCTGGAAGGGCAAACTCACCGAGGCGAGAAGTGTAACATTCCCTCCACCTAGCTTATAAAAGAGTTC TGTGCTTGTGTGGAGATTGGATCCGAAGAAACTGGCTGCTGGGTTTGGCCCGGGAATGGCAGTCTCTTTG GGAGATGCAGTCCATTTTGTCGCCCCCTCCACCCCTTCCCAAAAAGGAAAACTTCCGTTTGAGCTAATTC CTCTATTTCCTACTAAACACAGCGCTGGTGGCCCCAGAGCAGGCTGTGACAAGGGCTGGTGAAACCCCCT TCCTGTGTTCGCCCTTTGTTCCGGCGCGCGATGGTGAGATAACTGTTCCAAGCTGAGGGACAGCTCTGGA TAGGACAAAGAGAGCAAGACTTCCCCGCCCCTGGGAGCCCTCCAGACCCTGACAGTTTGTCTCACCCATT CCTGAACTCCTATCATTTTGGCCTGAAGGCTATG
	nt 510 - nt 2083 of AJ009634.1
Notes:	The Fjx1 probe used in this study by Ashery-Padan et al., 1999 [PMID:10072791] is described as "a 1.6 kb probe (SacII-EcoRI fragment)." Editors Note: the beginning and end co-ordinates against the Fjx1 sequence submitted to GenBank by Gessler M. (one author of this publication) were deduced using this information.
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	10.5 dpc
Theiler Stage:	TS17
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Ashery-Padan R; Alvarez-Bolado G; Klamt B; Gessler M; Gruss P, 1999 [PMID:10072791] , Indexed and Spatially Mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/S0925-4773(98)00218-4] [ PMID:10072791] Ashery-Padan R, Alvarez-Bolado G, Klamt B, Gessler M, Gruss P 1999 Fjx1, the murine homologue of the Drosophila four-jointed gene, codes for a putative secreted protein expressed in restricted domains of the developing and adult brain. Mech Dev (80):213-7
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source