EMAGE mouse gene expression spatial database

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EMAGE:5369

Zscan10 zinc finger and SCAN domain containing 10 ( MGI:3040700)
TS16 (9.5 dpc)
in situ hybridisation

Data Images


Fig3g of [doi:10.1093/nar/gkl631] [PMID:16971461] Copyright: This image is from Zhang et al., Nucleic Acids Res 2006 34(17):4780-90, an open-access article distributed under the terms of the Creative Commons Attribution License

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Image annotations: otic vesicle (ov), branchial arch (ba), hindgut (hg).

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

5369_wholemount__moderate.wlz

5369_wholemount__weak.wlz

5369_wholemount__possible.wlz

5369_wholemount__notDetected.wlz

5369_wholemount__strong.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:5369_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

hindgut

detected

branchial arch

detected

otocyst

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Zscan10 probeA
Entity Detected:	Zscan10, zinc finger and SCAN domain containing 10 ( MGI:3040700)
Sequence:	sense strand is shown >Zscan10 probeA TTTCCCGGGATTCCTTTCCCAAACTAGGCTACGCTGCCTCTTACCCTGAATTCTCCCAAGGATCCCCAAA CATCTCGGCCTCAGGCGTCGGTACCTGGAGTGCTCCACAGGTGCAGGAGGAGCTGAAGAAAGGGATTTAA GAGCGGCCCAGGTGTGGGAGTTGTGAAAGATGCTGGCGGAACCAGTCCCTGATGCCCTGGAACAAGAGCA TCCCGGAGCAGTGAAGTTGGAGGAGGATGAAGTTGGCGAGGAGGATCCCAGGCTCGCAGAGTCCAGGCCT AGGCCTGAGGTGGCCCACCAGCTTTTCAGATGCTTCCAGTATCAGGAAGATATGGGGCCACGGGCATCCC TGGGCCGGCTCCGGGAACTCTGCAACCACTGGCTGCGACCGGCTCTGCACACCAAGAAGCAGATCCTGGA GCTGCTGGTACTGGAGCAGTTCCTGAGTGTCCTGCCCCCGCATGTGCTGAGCCGGCTGCACGGCCAACCG CTCCGGGACGGAGAGGAGGTGGTACAGCTATTGGAGGGCGTGCCCAGAGACATCAGCCACATGGGGCCAC TGGATTTTAGCTTCAGTGCTGGCAAGAATGCCCCTGCAGACATCATCTCAGAGGAACAAAATAGCCCTTC CCAGGTCCCCAGCCACAGCCCCCAGACGGAGTTGCCCTCAGAAGAGATTCCAGCCCTACATCCACTGAAT GAGTTACCTCCACCTCAGCCAGCACCCATAAGGCCTGCTGAGCCTGAGGAGTGGAGACTGGCCCCCAGTT CAAATTGGCCAATGAGCCCAGAGCCCCAGGAGATACTCCAGGACCCACGAGAAAGCAACCCTTCCCAGGG CCCTTCATGGCTTGAGGAGAATTCCAGAGACCAAGAGCTGGCGGCTGTGTTGGAGTCCCTCACCTTTGAG GATACCTCAGAGAAGAGAGCTTGGCCTGCAAACCCTCTTGGATTTGGAAGCAGAATGCCTGACAATGAGG AACTTAAAGTTGAAGAGCCTAAAGTGACTACTTGGCCTGTCGTCATTGGAGCAGAGTCCCAGACAGAGAA ACCTGAAGTTGCAGGAGAGCCTCTTACGCAAACTGAAGGGCAGGAGACCAGCAGCACTGGTTGGGGAGGT ACTCCTGCTGACGGCAGTGAAGTTGTGAAGGCCCACCAGTTACAATCTCACCCCAACTTGCAACCTCACC CAAGCTCTCGATCCTTCCGATGTCTGTGGTGTGGGAAGACTTTTGGACGCAGCTCGATCCTCAAGCTGCA CATGCGCACTCACACAGACGAGCGGCCGCACGCCTGTCATCTCTGCAACCGCCGCTTCCGCCAGAGCTCA CACCTGACGAAGCACTTGCTAACGCATTCCTCTGAGCCTGCCTTCCGATGCGCCGAGTGTAACCAGGGCT TTCAGCGTCGCTCCAGCCTCATGCAGCACCTGCTGGCACATGCCCAGGGAAAGAATCTCACGCCAAATCC AGAAGGCAAGACAAAAGTGCCAGAGATGGCAGCTGTCCTCTGTTCCCACTGCGGGCAGACCTTCAAGCGG CGCTCTAGCTTAAAGCGTCACCTGCGTAACCATGCCAAGGACAAGGACCATCTGTCCTCTGAAGACCCTG GCAGCCTTAGCTCTAGCCAGGAGAGTAACCCCTATGTGTGTAGTGACTGTGGCAAGGCCTTCCGACAAAG CGAGCAACTAATGATCCACACTAGGCGAGTCCATACCCGTGAACGACCCTTCTCCTGCCAGGTCTGTGGC CGCTGCTTTACCCAAAATTCCCAGCTGATCAGCCACCAGCAGATTCATACGGGTGAGAAGCCTCACGCCT GTCCTCAGTGCAGCAAACGCTTTGTGAGACGAGCTGGCCTTGCTCGGCATCTGTTGACCCACGGTAGCCT CCGGCCTTACCACTGTGCCCAATGTGGCAAAAGCTTTCGCCAAATGCGAGACCTAACCCGCCACGTACGC TGCCACACGGGGGAGAAGCCCTGCCGATGCAACGAATGTGGAGAGGGGTTCACCCAGAATGCCCACCTGG CACGCCACCAACGCATCCACACGGGGGAGAAGCCCCACGCCTGTGACATCTGTGGTCACCGCTTTCGTAA CAGCTCCAACTTGGCCCGCCACCGCCGCAGCCACACTGGCGAACGGCCCTATAGCTGTCCAACCTGTGGC CGCAGTTTCCGGCGCAATGCGCACCTGCAGCGCCACCTGATCACACACACAGGGTCAAAGCAAGAAAAGG AAGTTCCTCAGGAGTGCCCTGAGTGTGGCAAGAGCTTCAATCGCAGCTGCAACTTGCTGCGCCACCTGCT GGTTCACACCGGTGCAAGGCCTTACTCCTGTGCACTGTGTGGCCGCAGCTTCAGCCGTAATTCACACCTG CTGCGCCACCTGCGAACCCATGCCCGGGAATCGCTGTACTAACTGCTTCACCCATGTTCCAGCAACCTTG TCCCATGTGCACCTCCCTGCATGAATAAGATTCCCTATGGTGTCCCCTTCACACATATCTCTCCTCCCAG TTCCTCCACCTTCGACCTCCCCCACAGTTTACCTCTTCCCTTGACTCCAAGAATTTGTTTTTAAGTAAAG CTGCCTTCTCAAAATTAAAAAAAAAAAAAAAAA
	nt 1 - nt 2623 of DQ323930.1
Notes:	The Zscan10 (Zfp206) probe used in this study by Zhang et al., 2006 [PMID:16971461] was "in vitro transcribed from ZFP206 isoform 2 cDNA". Editors note: the authors state elsewhere that ZFP206 isoform 2 is "missing one of the zinc fingers" and give DQ323930 as its GenBank sequence identifier (see Fig 4 therein for a schematic representation of its structure).
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	9.5 dpc
Theiler Stage:	TS16
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Zhang W; Walker E; Tamplin OJ; Rossant J; Stanford WL; Hughes TR, 2006 [PMID:16971461] . Indexed and spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1093/nar/gkl631] [ PMID:16971461] Zhang W, Walker E, Tamplin OJ, Rossant J, Stanford WL, Hughes TR 2006 Zfp206 regulates ES cell gene expression and differentiation. Nucleic Acids Res (34):4780-90
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source