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EMAGE:541

Vax1 ventral anterior homeobox containing gene 1 ( MGI:1277163)
TS16 (11.0 dpc)
in situ hybridisation

Data Images
EMAGE:541
Fig4D Hallonet et al, 1998 [PMID:9636075] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
This is a vibratome section from a wholemount stained embryo. Abbreviations: i, developing infundibulum; OC, optic cup; Od, optic disk; Op, developing olfactory placode; OS, optic stalk; Sep, Septal region.
Expression Pattern Description
Spatial Annotation:
EMAGE:541EMAGE:541Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
541_voxel_strong_3D_1.wlz
541_voxel_weak_3D_1.wlz
541_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:541_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
optic stalk
detected detected
regionalThe caudal and rostral part of the optic stalk express Vax1. Expression is absent from the optic cup and is restricted to the optic disk and stalk. Caudally, expression is limited at the border with the forming infundibulum
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1289531
Entity Detected:Vax1, ventral anterior homeobox containing gene 1 ( MGI:1277163)
Notes:The probe used in this study by Hallonet et al, 1998 [PMID:9636075] is called cf5 by the authors and described as a "partial cDNA clone", "containing the coding region of the mouse Vax1 homeobox". Exact sequence is not specified.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:11.0 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount plus section of wholemount
Procedures
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Hallonet et al, 1998 [PMID:9636075] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:9636075] Hallonet M, Hollemann T, Wehr R, Jenkins NA, Copeland NG, Pieler T, Gruss P 1998 Vax1 is a novel homeobox-containing gene expressed in the developing anterior ventral forebrain. Development (125):2599-610
Links:MGI:1303377 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI